Gene Card
Gene overview
cDNA / CDS / Protein Sequences
621 bp · LXL04_036665|LXL04_036665|OH1004|cDNA
ATGGCCAGCGCGACAACTACATGGAGCATGTCATCTCTGAAATCGTCACTTCCTTCGATTTCTAGTTCAAGTTCTTCAAATCCCCATTCTTCAGTTCGTTGTTCATTTCGACCCCCAACATTTACGCGCTCTAAACCTAATTCGAAGCCTCTTTTTGGATCATTTCTCGGTCTCGCCCCTCTTCACCCACTTCTAAATCTCAGTTCTTCAGGAAACAACGGTTTTGAGCATAACTTCACCATAATCGACAATGGCGGCCG...
621 bp · LXL04_036665|LXL04_036665|OH1004|CDS
ATGGCCAGCGCGACAACTACATGGAGCATGTCATCTCTGAAATCGTCACTTCCTTCGATTTCTAGTTCAAGTTCTTCAAATCCCCATTCTTCAGTTCGTTGTTCATTTCGACCCCCAACATTTACGCGCTCTAAACCTAATTCGAAGCCTCTTTTTGGATCATTTCTCGGTCTCGCCCCTCTTCACCCACTTCTAAATCTCAGTTCTTCAGGAAACAACGGTTTTGAGCATAACTTCACCATAATCGACAATGGCGGCCG...
Protein
Download Protein FASTA206 aa · LXL04_036665|LXL04_036665|OH1004|PROTEIN
MASATTTWSMSSLKSSLPSISSSSSSNPHSSVRCSFRPPTFTRSKPNSKPLFGSFLGLAPLHPLLNLSSSGNNGFEHNFTIIDNGGRVSAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAVRKFVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036665 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036665 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr08:46441820-46442681 (-) | ||||||
| Description | Similar to RPL17: 50S ribosomal protein L17, chloroplastic | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0022625 cytosolic large ribosomal subunit Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0019843 rRNA binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT3G54210 nta:107821645 syr:SynRCC307_2140 tel:tlr0106 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01196.25Ribosomal_L17110-206 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036665 | PF01196.25 | Ribosomal_L17 | 110 | 206 | 4e-38 | 130.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9M385 | Arabidopsis thaliana | Large ribosomal subunit protein bL17c | 72.059% | Swiss-Prot | strong database homology |