LXL04_036529 | RubberDandelionOmics

Gene overview

LXL04_036529

Reference: OH-1004 Chr: Chr08 Coordinates: 44054836-44057189 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1644 bp · LXL04_036529|LXL04_036529|OH1004|cDNA

ATGTCACTAGAACAAGAGAACGCTATTCGTCCAATAGCCAACTTTCCTCCAAACATTTGGGGAGATCAGTTTCTCACAAGTGATGAGCATGTAGAGCAACCCGAGATACAAGAAATAGCCAATTTGAAAGAACAAGTCCAAAAAGATTTATCGGCAGCTCTTAATGATCCCATACAACATTCAAATTTGTTGAAATTGATTGATGCAATCCAACGCCTGGGCATAGGTTATTACTTCGAATATGAGATTGAACAAGCCTT...

CDS

Download CDS FASTA

1644 bp · LXL04_036529|LXL04_036529|OH1004|CDS

ATGTCACTAGAACAAGAGAACGCTATTCGTCCAATAGCCAACTTTCCTCCAAACATTTGGGGAGATCAGTTTCTCACAAGTGATGAGCATGTAGAGCAACCCGAGATACAAGAAATAGCCAATTTGAAAGAACAAGTCCAAAAAGATTTATCGGCAGCTCTTAATGATCCCATACAACATTCAAATTTGTTGAAATTGATTGATGCAATCCAACGCCTGGGCATAGGTTATTACTTCGAATATGAGATTGAACAAGCCTT...

Protein

Download Protein FASTA

547 aa · LXL04_036529|LXL04_036529|OH1004|PROTEIN

MSLEQENAIRPIANFPPNIWGDQFLTSDEHVEQPEIQEIANLKEQVQKDLSAALNDPIQHSNLLKLIDAIQRLGIGYYFEYEIEQALKHIYDTYGDEWNGNSSSLWFRLLRQHGFNVTCGFCKNYQDENGDFKESLSNDVEGMLELYEATYLRVEGEVILDDAIVFTRSRLNDISKDTLFGNSILSIQIQATLKQPIRKRMPRLEALRYIPFYEQQHSHNESLLKLAKLGFNLLQSLHKKELSHVSKWWNGLDVPNNLPY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036529`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_036529`
Location	Chr08:44054836-44057189 (-)
Description	Similar to CarS: E-beta-caryophyllene synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036529` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0016102 diterpenoid biosynthetic process Biological Process GO:0046246 terpene biosynthetic process Biological Process GO:0051762 sesquiterpene biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0010333 terpene synthase activity Molecular Function GO:0034005 germacrene-A synthase activity Molecular Function GO:0080016 (-)-E-beta-caryophyllene synthase activity Molecular Function
KEGG gene cross-reference	ag:AAL79181 ag:AFM43735 ag:AMP42991 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.770

Rank 1 · LXL04_036529 · OH-1004

Nucleus0.199

Rank 2 · LXL04_036529 · OH-1004

Plastid0.161

Rank 3 · LXL04_036529 · OH-1004

Endoplasmic reticulum0.064

Rank 4 · LXL04_036529 · OH-1004

Peroxisome0.045

Rank 5 · LXL04_036529 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01397.28Terpene_synth19-191 aa

PF03936.22Terpene_synth_C252-489 aa

PF19086.6Terpene_syn_C_2290-489 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036529	`PF01397.28`	Terpene_synth	19	191	5.1e-46	157.5
LXL04_036529	`PF03936.22`	Terpene_synth_C	252	489	5.3e-90	301.6
LXL04_036529	`PF19086.6`	Terpene_syn_C_2	290	489	2.7e-50	171.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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