LXL04_036160 | RubberDandelionOmics

Gene overview

LXL04_036160

Reference: OH-1004 Chr: Chr08 Coordinates: 36973481-36975127 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

912 bp · LXL04_036160|LXL04_036160|OH1004|cDNA

ATGCAGATGGAATTCGAAGGTCGGTTTGGACAAGCTCAGAGGCAGAAATATGATTGCCTTCTTTTCGATCTGGATGATACTCTTTACCCTGTTAGTGCTGGATTGGCAGCAGGAGTTCTGAAGAACATCAAAGATTACATGGTTGAAAAGCTTGGAATCGCTGCAGAAAAGATTCCTGAACTGTGCAATTTGCTGTACAAAAACTACGGTACCACAATGGCAGGCATTCGGGCAATTGGCTACGATTTCGACTATGATGA...

CDS

Download CDS FASTA

912 bp · LXL04_036160|LXL04_036160|OH1004|CDS

ATGCAGATGGAATTCGAAGGTCGGTTTGGACAAGCTCAGAGGCAGAAATATGATTGCCTTCTTTTCGATCTGGATGATACTCTTTACCCTGTTAGTGCTGGATTGGCAGCAGGAGTTCTGAAGAACATCAAAGATTACATGGTTGAAAAGCTTGGAATCGCTGCAGAAAAGATTCCTGAACTGTGCAATTTGCTGTACAAAAACTACGGTACCACAATGGCAGGCATTCGGGCAATTGGCTACGATTTCGACTATGATGA...

Protein

Download Protein FASTA

303 aa · LXL04_036160|LXL04_036160|OH1004|PROTEIN

MQMEFEGRFGQAQRQKYDCLLFDLDDTLYPVSAGLAAGVLKNIKDYMVEKLGIAAEKIPELCNLLYKNYGTTMAGIRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRTLLLSLPIRKVIFTNADKIHAAKVLNKLGLEDCFEGIICFETLNPVHKTVASDDEDDLEFIGSTTQSPNNNTRNEIFDIIEHFSRSNSITELPKTPIVCKPSEDAIEKALKIANINPQRTLFFEDSVRNIQSGKRVGLDTVLIGTSHRCKGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036160`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_036160`
Location	Chr08:36973481-36975127 (-)
Description	Similar to SPAC24B11.05: Uncharacterized protein C24B11.05 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036160` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006206 pyrimidine nucleobase metabolic process Biological Process GO:0009166 nucleotide catabolic process Biological Process GO:0016036 cellular response to phosphate starvation Biological Process GO:0070328 triglyceride homeostasis Biological Process GO:0090549 response to carbon starvation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0008252 nucleotidase activity Molecular Function GO:0008253 5'-nucleotidase activity Molecular Function GO:0052642 lysophosphatidic acid phosphatase activity Molecular Function
KEGG gene cross-reference	sce:YER037W sce:YGL224C spo:2541562 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.554

Rank 1 · LXL04_036160 · OH-1004

Nucleus0.485

Rank 2 · LXL04_036160 · OH-1004

Cell membrane0.057

Rank 3 · LXL04_036160 · OH-1004

Mitochondrion0.053

Rank 4 · LXL04_036160 · OH-1004

Endoplasmic reticulum0.042

Rank 5 · LXL04_036160 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00702.33Hydrolase17-152 aa

PF13419.13HAD_2182-250 aa

PF00702.33Hydrolase183-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036160	`PF00702.33`	Hydrolase	17	152	3e-15	57.8
LXL04_036160	`PF13419.13`	HAD_2	182	250	5.7e-13	50.0
LXL04_036160	`PF00702.33`	Hydrolase	183	245	3e-15	57.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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