LXL04_036092 | RubberDandelionOmics

Gene overview

LXL04_036092

Reference: OH-1004 Chr: Chr08 Coordinates: 35535337-35539631 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1629 bp · LXL04_036092|LXL04_036092|OH1004|cDNA

ATGATTAAAGTGATTATAATGGAATCGACATCAGCAAACGATCTGACGACCGACGTTGAATCTACGCCATTGACTGTGCTCGACGCCACCAGGTATGAGCTCCAGGATCTCGAATCAATCGACCTCCCGCCTACCCTCATCGAGATTGATTTGACCGGCAATCGGCTGACGAAGTTGGATTCGCGTATTTCTCATTTATCTAATCTCAAAAAGCTCTCTCTGCGACAGAATCTCTTTGATGATTCCGGCGTTGACCCGAT...

CDS

Download CDS FASTA

1629 bp · LXL04_036092|LXL04_036092|OH1004|CDS

ATGATTAAAGTGATTATAATGGAATCGACATCAGCAAACGATCTGACGACCGACGTTGAATCTACGCCATTGACTGTGCTCGACGCCACCAGGTATGAGCTCCAGGATCTCGAATCAATCGACCTCCCGCCTACCCTCATCGAGATTGATTTGACCGGCAATCGGCTGACGAAGTTGGATTCGCGTATTTCTCATTTATCTAATCTCAAAAAGCTCTCTCTGCGACAGAATCTCTTTGATGATTCCGGCGTTGACCCGAT...

Protein

Download Protein FASTA

542 aa · LXL04_036092|LXL04_036092|OH1004|PROTEIN

MIKVIIMESTSANDLTTDVESTPLTVLDATRYELQDLESIDLPPTLIEIDLTGNRLTKLDSRISHLSNLKKLSLRQNLFDDSGVDPISQWNTLSGLQFAMAINKLALANLVYKFEFKVPNEGKLEDLDMSESSGLTGTTKSLESRIERANRGRKKERGTYRKMRSIELWFPSLMAEEEEEDAIPICGVRRGGRRRRWKKKNLSCGFLLAQRKKRGRGRSEELLLTDNQLQKIPDVSIFKALLVFDVSFNEISSMVGLSKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036092`
TK1151 ID	TkA04G076450
OH-1004 ID	LXL04_036092
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	57.100
Protein coverage (%)	TK1151 100.000 / OH-1004 98.893 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036092

Location Chr08:35535337-35539631 (+)

Description Similar to At5g19680: Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19680`	Inhibitor of protein-phosphatase 1 (PP1).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036092 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007059 chromosome segregation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0034504 protein localization to nucleus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0004864 protein phosphatase inhibitor activity Molecular Function

GO:0019888 protein phosphatase regulator activity Molecular Function

GO:0030234 enzyme regulator activity Molecular Function

KEGG gene cross-reference

ath:AT5G19680

hsa:5510

pon:100171414

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.503

Rank 1 · LXL04_036092 · OH-1004

Cytoplasm0.413

Rank 2 · LXL04_036092 · OH-1004

Mitochondrion0.084

Rank 3 · LXL04_036092 · OH-1004

Cell membrane0.057

Rank 4 · LXL04_036092 · OH-1004

Endoplasmic reticulum0.038

Rank 5 · LXL04_036092 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12799.14LRR_444-81 aa

PF13855.13LRR_8264-318 aa

PF12799.14LRR_4306-346 aa

PF13855.13LRR_8330-383 aa

PF12799.14LRR_4351-390 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036092	`PF12799.14`	LRR_4	44	81	3.7e-30	104.0
LXL04_036092	`PF13855.13`	LRR_8	264	318	3.1e-18	66.0
LXL04_036092	`PF12799.14`	LRR_4	306	346	3.7e-30	104.0
LXL04_036092	`PF13855.13`	LRR_8	330	383	3.1e-18	66.0
LXL04_036092	`PF12799.14`	LRR_4	351	390	3.7e-30	104.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84WJ9`	Arabidopsis thaliana	Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog	66.667%	Swiss-Prot	weak database homology

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