LXL04_036075 | RubberDandelionOmics

Gene overview

LXL04_036075

Reference: OH-1004 Chr: Chr08 Coordinates: 35157072-35165393 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1491 bp · LXL04_036075|LXL04_036075|OH1004|cDNA

ATGTCTCCTCCCCTCGATTTTGAACTCATCTCAAAATGCAGTACGAAATCGAGATCCCACCAAACTGTGGCTTCATCCCTCAACAGTGCCCTACTCCTGTCCGGCAACCCTTTCCCGTACTACTTCCTCATAGCCCTGGAAGCCGGAAACATATTCAGAGCTTTCATCCTATTACTCTCCTTCCCAATTATCCACACCATTTCCATCTTCTCCAAGTCTGTATCTATTCAGATCTTTATCTTCATCACGTTTGCCGGGTT...

CDS

Download CDS FASTA

1491 bp · LXL04_036075|LXL04_036075|OH1004|CDS

ATGTCTCCTCCCCTCGATTTTGAACTCATCTCAAAATGCAGTACGAAATCGAGATCCCACCAAACTGTGGCTTCATCCCTCAACAGTGCCCTACTCCTGTCCGGCAACCCTTTCCCGTACTACTTCCTCATAGCCCTGGAAGCCGGAAACATATTCAGAGCTTTCATCCTATTACTCTCCTTCCCAATTATCCACACCATTTCCATCTTCTCCAAGTCTGTATCTATTCAGATCTTTATCTTCATCACGTTTGCCGGGTT...

Protein

Download Protein FASTA

496 aa · LXL04_036075|LXL04_036075|OH1004|PROTEIN

MSPPLDFELISKCSTKSRSHQTVASSLNSALLLSGNPFPYYFLIALEAGNIFRAFILLLSFPIIHTISIFSKSVSIQIFIFITFAGLRIRDVELVSSSVLPRFYVGDVRPETWKVFNSFGKRYVVTSSPRVMVEHFAKNFLGADEVLGTELEVTKSGRATGFVKEPGVLIGEFKKSAILQEFEGSNLPDLGIGGGETDRDFMATCKEGYMVPQTRCEPLPKNKLLSPIIFHEGRLVQRPTPLVALLTFLWMPIGIFLSIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036075`
TK1151 ID	TkA04G080550
OH-1004 ID	LXL04_036075
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.040 / OH-1004 92.540 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036075

Location Chr08:35157072-35165393 (-)

Description Similar to GPAT6: Glycerol-3-phosphate 2-O-acyltransferase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38110`	Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis.	A distinct type of glycerol-3-phosphate acyltransferase with sn-2 preference and phosphatase activity producing 2-monoacylglycerol.2010 · DOI: 10.1073/pnas.0914149107
`At1g01610`	Esterifies acyl-group from acyl-ACP to the sn-2 position of glycerol-3-phosphate, a step in cutin biosynthesis.	A distinct type of glycerol-3-phosphate acyltransferase with sn-2 preference and phosphatase activity producing 2-monoacylglycerol.2010 · DOI: 10.1073/pnas.0914149107
`UniProt: Q5XF03`	Esterifies acyl-group from acyl-ACP to the sn-1 position of glycerol-3-phosphate, an essential step in glycerolipid biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036075 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009908 flower development Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0016024 CDP-diacylglycerol biosynthetic process Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0046486 glycerolipid metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004366 glycerol-3-phosphate O-acyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01610

ath:AT2G38110

ath:AT4G00400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.314

Rank 1 · LXL04_036075 · OH-1004

Cell membrane0.206

Rank 2 · LXL04_036075 · OH-1004

Golgi apparatus0.156

Rank 3 · LXL04_036075 · OH-1004

Lysosome / Vacuole0.132

Rank 4 · LXL04_036075 · OH-1004

Cytoplasm0.085

Rank 5 · LXL04_036075 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23270.2HAD_RAM2_N22-211 aa

PF12710.14HAD64-185 aa

PF01553.27Acyltransferase298-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036075	`PF23270.2`	HAD_RAM2_N	22	211	2.8e-58	197.4
LXL04_036075	`PF12710.14`	HAD	64	185	6e-11	43.8
LXL04_036075	`PF01553.27`	Acyltransferase	298	399	1.7e-08	35.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80437`	Arabidopsis thaliana	Glycerol-3-phosphate 2-O-acyltransferase 6	73.984%	Swiss-Prot	strong database homology
`Q9LMM0`	Arabidopsis thaliana	Glycerol-3-phosphate 2-O-acyltransferase 4	60.285%	Swiss-Prot	strong database homology
`Q5XF03`	Arabidopsis thaliana	Probable glycerol-3-phosphate acyltransferase 8	58.586%	Swiss-Prot	strong database homology

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