LXL04_036038 | RubberDandelionOmics

Gene overview

LXL04_036038

Reference: OH-1004 Chr: Chr08 Coordinates: 34545501-34547662 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1717 bp · LXL04_036038|LXL04_036038|OH1004|cDNA

ATGACCCATTCATTTCCCCCAAAACATACGATTCGCGAGTCACTCCGCCTTCTATCTTCTTCATCTACTCCAGTCTTCAGAATTTCCACCCTTTTCTCGACTTCTGTCACTGAATTCCCACTTTCGCTAATCAATGGCGTCAATTAACTTCAACCCCTTTGGGGAAAACTGGTTCAAAAAGCCACCAAACCCTCTACAATCCATAAACCTTCACGCTTTTGCAGATTCCATAAACCCATTCAAACACCAACCTCAATTCG...

CDS

Download CDS FASTA

1584 bp · LXL04_036038|LXL04_036038|OH1004|CDS

ATGGCGTCAATTAACTTCAACCCCTTTGGGGAAAACTGGTTCAAAAAGCCACCAAACCCTCTACAATCCATAAACCTTCACGCTTTTGCAGATTCCATAAACCCATTCAAACACCAACCTCAATTCGATCCACTTTCTTCACCATTTGCGGCACTCTCTATTTCCAACCCATTCAAGAAAAAAACAGAACCTGAACTCGAAACACAAAGACCCAAACCAGGATACTACAAAAAAATGCTTGAACAGTTCTACTGGGAGTC...

Protein

Download Protein FASTA

527 aa · LXL04_036038|LXL04_036038|OH1004|PROTEIN

MASINFNPFGENWFKKPPNPLQSINLHAFADSINPFKHQPQFDPLSSPFAALSISNPFKKKTEPELETQRPKPGYYKKMLEQFYWESENRPDYRHTPEVERILNEDPIWEKKENPTQEEIEENARWLKEFRESPVVRFLARAEEVMDEINEMELKENSKPYRMEDTEYWKSIPHVIGPDGRPMPRKAIRTKRESDDKFWDFAKQFFFGLWGFQQRPYPPGRPIDVSQAIGYKRLEKRYYDFIMRSGGFFYKDRIGRSRGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036038`
TK1151 ID	TkA04G082380
OH-1004 ID	LXL04_036038
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036038

Location Chr08:34545501-34547662 (-)

Description Similar to TIC56: Protein TIC 56, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g01590`	Involved in protein precursor import into chloroplasts.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036038 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045037 protein import into chloroplast stroma Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0008320 protein transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT5G01590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.403

Rank 1 · LXL04_036038 · OH-1004

Plastid0.255

Rank 2 · LXL04_036038 · OH-1004

Nucleus0.215

Rank 3 · LXL04_036038 · OH-1004

Endoplasmic reticulum0.084

Rank 4 · LXL04_036038 · OH-1004

Cell membrane0.063

Rank 5 · LXL04_036038 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14237.12GYF_2255-293 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036038	`PF14237.12`	GYF_2	255	293	1.5e-08	35.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7Y1W1`	Arabidopsis thaliana	Protein TIC 56, chloroplastic	66.667%	Swiss-Prot	strong database homology

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