LXL04_036011 | RubberDandelionOmics

Gene overview

LXL04_036011

Reference: OH-1004 Chr: Chr08 Coordinates: 34110206-34111678 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1029 bp · LXL04_036011|LXL04_036011|OH1004|cDNA

atgaTCTTAAAAGACTATGGTACCTTAAAACTTCATCTGCCTCTCCAACGAATAGGATATTTGTCAATTCTGCATGACGGAATTGATTTTTCTATGAAATTCAGTCGTGCTAAATTTGAAGAGCTTAACATGAGCTTCTTTCATGCGTGCATGGAGACTGTGGAGGCATGTTTAAGGGATGCAAATATGGAGACATCATGTGTAGATGAGGTGATTCTTGTGGGTGGATCAACTAGAATCCCAAAGGTCCAGTGTATGTT...

CDS

Download CDS FASTA

1029 bp · LXL04_036011|LXL04_036011|OH1004|CDS

ATGATCTTAAAAGACTATGGTACCTTAAAACTTCATCTGCCTCTCCAACGAATAGGATATTTGTCAATTCTGCATGACGGAATTGATTTTTCTATGAAATTCAGTCGTGCTAAATTTGAAGAGCTTAACATGAGCTTCTTTCATGCGTGCATGGAGACTGTGGAGGCATGTTTAAGGGATGCAAATATGGAGACATCATGTGTAGATGAGGTGATTCTTGTGGGTGGATCAACTAGAATCCCAAAGGTCCAGTGTATGTT...

Protein

Download Protein FASTA

342 aa · LXL04_036011|LXL04_036011|OH1004|PROTEIN

MILKDYGTLKLHLPLQRIGYLSILHDGIDFSMKFSRAKFEELNMSFFHACMETVEACLRDANMETSCVDEVILVGGSTRIPKVQCMLQNLFGRKDLCKSLNPDEAVAYGTAVMAEKLSGNSCRDLMLLDVTPLSLGVELIGEIFDVVIPRNTPIPRNTPIPTKKSKFFETTYDNQDSVNIQVYQGERARSTDNHFLGKYTLSGLPPAPKGNTQFNQSFEIDANGILTVTSDIISTGKTQKLTITNENGRLSKEQIEKMVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036011`
TK1151 ID	TkA04G084400
OH-1004 ID	LXL04_036011
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.900
Protein coverage (%)	TK1151 88.650 / OH-1004 85.965 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036011

Location Chr08:34110206-34111678 (-)

Description Similar to HSP70-4: Heat shock 70 kDa protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12580`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Comprehensive expression profile analysis of the Arabidopsis Hsp70 gene family.2001 · DOI: 10.1104/pp.126.2.789 Heat shock protein cognate 70-4 and an E3 ubiquitin ligase, CHIP, mediate plastid-destined precursor degradation through the ubiquitin-26S proteasome system in Arabidopsis.2009 · DOI: 10.1105/tpc.109.071548

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036011 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0006950 response to stress Biological Process

GO:0009266 response to temperature stimulus Biological Process

GO:0009408 response to heat Biological Process

GO:0009615 response to virus Biological Process

GO:0009617 response to bacterium Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042026 protein refolding Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G12580

sly:101247772

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.589

Rank 1 · LXL04_036011 · OH-1004

Nucleus0.359

Rank 2 · LXL04_036011 · OH-1004

Mitochondrion0.077

Rank 3 · LXL04_036011 · OH-1004

Cell membrane0.067

Rank 4 · LXL04_036011 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_036011 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00012.27HSP7018-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036011	`PF00012.27`	HSP70	18	339	1.2e-92	311.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LHA8`	Arabidopsis thaliana	Heat shock 70 kDa protein 4	55.728%	Swiss-Prot	strong database homology

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