LXL04_035769 | RubberDandelionOmics

Gene overview

LXL04_035769

Reference: OH-1004 Chr: Chr08 Coordinates: 28551014-28552534 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1161 bp · LXL04_035769|LXL04_035769|OH1004|cDNA

ATGGCTGCGGGTACAGAATTTTCGCCGACTTATGCAAGGTTAGAAGGTAGTTTCAACAAGGATATCGTGTCTCTTGGGGAAGACGAGATATCACAGAATTCAGATCGCTTGAAACAAATGGCGATTCGTAAACCTCCAAGGCATCTTTCCATTGTGCGACATAGTATGAGCACAGCAACGCTACTTGCGCCTTCAAATCCGGACTTTGGCCTCGGGATTGTTGCGTTCAAGTCTACAACAGATGAGAAATCTGAATTTTT...

CDS

Download CDS FASTA

1161 bp · LXL04_035769|LXL04_035769|OH1004|CDS

ATGGCTGCGGGTACAGAATTTTCGCCGACTTATGCAAGGTTAGAAGGTAGTTTCAACAAGGATATCGTGTCTCTTGGGGAAGACGAGATATCACAGAATTCAGATCGCTTGAAACAAATGGCGATTCGTAAACCTCCAAGGCATCTTTCCATTGTGCGACATAGTATGAGCACAGCAACGCTACTTGCGCCTTCAAATCCGGACTTTGGCCTCGGGATTGTTGCGTTCAAGTCTACAACAGATGAGAAATCTGAATTTTT...

Protein

Download Protein FASTA

386 aa · LXL04_035769|LXL04_035769|OH1004|PROTEIN

MAAGTEFSPTYARLEGSFNKDIVSLGEDEISQNSDRLKQMAIRKPPRHLSIVRHSMSTATLLAPSNPDFGLGIVAFKSTTDEKSEFLPVIRSGSCAEKGPKQYMEDEHICIDNLLDYLDQTEGFSSPGAFYGVFDGHGGTDAASFVRKNILKFIVDDPQFPVCLETAVRNAFVKADHAFADTTSLDTSSGTTALTVLLFGRMMLVANAGDCRAVLGKRGRAIELSKDHKPNCPSERLRIEQLGGAIYDGYLNGQLSVARA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035769`
TK1151 ID	TkA04G109710
OH-1004 ID	LXL04_035769
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035769

Location Chr08:28551014-28552534 (-)

Description Similar to PP2C27: Probable protein phosphatase 2C 27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33700`	Confers salt tolerance by triggering the expression of stress-responsive genes.	AtPP2CG1, a protein phosphatase 2C, positively regulates salt tolerance of Arabidopsis in abscisic acid-dependent manner.2012 · DOI: 10.1016/j.bbrc.2012.05.064
`At3g51470`	Probable protein phosphatase 2C 47.	No verified direct reference in this release
`At2g25620`	Probable protein phosphatase 2C 22.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0597200`	Probable protein phosphatase 2C 57.	No verified direct reference in this release
`Os02g0799000`	Probable protein phosphatase 2C 27.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035769 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0050688 regulation of defense response to virus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G25620

ath:AT2G33700

ath:AT3G51470

dosa:Os02g0799000

dosa:Os06g0597200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.490

Rank 1 · LXL04_035769 · OH-1004

Cytoplasm0.485

Rank 2 · LXL04_035769 · OH-1004

Cell membrane0.147

Rank 3 · LXL04_035769 · OH-1004

Endoplasmic reticulum0.049

Rank 4 · LXL04_035769 · OH-1004

Lysosome / Vacuole0.048

Rank 5 · LXL04_035769 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C92-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035769	`PF00481.27`	PP2C	92	343	1.6e-71	241.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93006`	Arabidopsis thaliana	Probable protein phosphatase 2C 27	70.052%	Swiss-Prot	strong database homology
`Q9SD02`	Arabidopsis thaliana	Probable protein phosphatase 2C 47	62.500%	Swiss-Prot	strong database homology
`Q9SLA1`	Arabidopsis thaliana	Probable protein phosphatase 2C 22	51.585%	Swiss-Prot	strong database homology
`Q69VD9`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 57	53.073%	Swiss-Prot	strong database homology
`Q69QZ0`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 27	53.571%	Swiss-Prot	strong database homology

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