LXL04_035659 | RubberDandelionOmics

Gene overview

LXL04_035659

Reference: OH-1004 Chr: Chr08 Coordinates: 26599586-26600413 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

828 bp · LXL04_035659|LXL04_035659|OH1004|cDNA

ATGTCTAACCGGTGGTGGACTGGTCAGGTCAACGTAGCCGGCGTAGAAACATCATCCGGCCTTTCTCAGGCAATCAAGAAACCAGATCTGGGGATCTCAATGAACGATACCACCACCGGAAGTGAAGAAGACGAAAGAGACAACAACAGCGATGATCCAAGAGACGGTGCAATCGACCCATCCAACCGTAGGCCACGAGGCCGACCTCCGGGATCGAAAAACAAACCAAAGCCACCAATTTTCGTCACCAGAGACAGCCC...

CDS

Download CDS FASTA

828 bp · LXL04_035659|LXL04_035659|OH1004|CDS

ATGTCTAACCGGTGGTGGACTGGTCAGGTCAACGTAGCCGGCGTAGAAACATCATCCGGCCTTTCTCAGGCAATCAAGAAACCAGATCTGGGGATCTCAATGAACGATACCACCACCGGAAGTGAAGAAGACGAAAGAGACAACAACAGCGATGATCCAAGAGACGGTGCAATCGACCCATCCAACCGTAGGCCACGAGGCCGACCTCCGGGATCGAAAAACAAACCAAAGCCACCAATTTTCGTCACCAGAGACAGCCC...

Protein

Download Protein FASTA

275 aa · LXL04_035659|LXL04_035659|OH1004|PROTEIN

MSNRWWTGQVNVAGVETSSGLSQAIKKPDLGISMNDTTTGSEEDERDNNSDDPRDGAIDPSNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVASGTDIAESIARFSRKRQRGVCVMSASGTVMNVTLRQPSAPGSVMALQGRYEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPVEEEEADSVTPGLGGGGGGSPPQLGMGDHQNPMPGYNMQPNLIPNGGGQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035659`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035659

Location Chr08:26599586-26600413 (-)

Description Similar to AHL20: AT-hook motif nuclear-localized protein 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14465`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity).	Overexpression of AHL20 negatively regulates defenses in Arabidopsis.2010 · DOI: 10.1111/j.1744-7909.2010.00969.x
`At3g04570`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity).	Overexpression of AHL20 negatively regulates defenses in Arabidopsis.2010 · DOI: 10.1111/j.1744-7909.2010.00969.x The Arabidopsis thaliana DNA-binding protein AHL19 mediates verticillium wilt resistance.2011 · DOI: 10.1094/mpmi-04-11-0090
`At4g22810`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At2g35270`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At1g76500`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs) (By similarity).	The AT-hook-containing proteins SOB3/AHL29 and ESC/AHL27 are negative modulators of hypocotyl growth in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2007.03393.x Over-expression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana.2009 · DOI: 10.1007/s11103-009-9507-9

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035659 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048440 carpel development Biological Process

GO:0048653 anther development Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G76500

ath:AT2G35270

ath:AT3G04570

ath:AT4G14465

ath:AT4G22810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.954

Rank 1 · LXL04_035659 · OH-1004

Cytoplasm0.108

Rank 2 · LXL04_035659 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_035659 · OH-1004

Endoplasmic reticulum0.026

Rank 4 · LXL04_035659 · OH-1004

Plastid0.012

Rank 5 · LXL04_035659 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03479.22PCC85-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035659	`PF03479.22`	PCC	85	202	8.7e-32	110.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWQ2`	Arabidopsis thaliana	AT-hook motif nuclear-localized protein 20	62.369%	Swiss-Prot	strong database homology
`Q9SR17`	Arabidopsis thaliana	AT-hook motif nuclear-localized protein 19	55.128%	Swiss-Prot	strong database homology
`O49662`	Arabidopsis thaliana	AT-hook motif nuclear-localized protein 24	60.909%	Swiss-Prot	strong database homology
`O82166`	Arabidopsis thaliana	AT-hook motif nuclear-localized protein 21	65.584%	Swiss-Prot	moderate database homology
`Q9C9K7`	Arabidopsis thaliana	AT-hook motif nuclear-localized protein 29	60.326%	Swiss-Prot	moderate database homology

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