LXL04_035644 | RubberDandelionOmics

Gene overview

LXL04_035644

Reference: OH-1004 Chr: Chr08 Coordinates: 26231220-26236008 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2412 bp · LXL04_035644|LXL04_035644|OH1004|cDNA

atgtcgtgtctaatccgtgtctattcgtgtttatccgtgtttgacacgaataaacacgaaacacgaatttctttattcgtgtcgacacgaataaacacgaaacacgaatttgttaaacacgaacacggaaaacccgtgtcgtgttcgtgtcgtgttattcgtgtcgtgttccaaattgccagAAACAAAGCAAAGCGAAGTAAAACAATGGGCGATGGCGATGAGCTACACGAAGAAGAACGTTTTGACGTCCTCACTAA...

CDS

Download CDS FASTA

2412 bp · LXL04_035644|LXL04_035644|OH1004|CDS

ATGTCGTGTCTAATCCGTGTCTATTCGTGTTTATCCGTGTTTGACACGAATAAACACGAAACACGAATTTCTTTATTCGTGTCGACACGAATAAACACGAAACACGAATTTGTTAAACACGAACACGGAAAACCCGTGTCGTGTTCGTGTCGTGTTATTCGTGTCGTGTTCCAAATTGCCAGAAACAAAGCAAAGCGAAGTAAAACAATGGGCGATGGCGATGAGCTACACGAAGAAGAACGTTTTGACGTCCTCACTAA...

Protein

Download Protein FASTA

803 aa · LXL04_035644|LXL04_035644|OH1004|PROTEIN

MSCLIRVYSCLSVFDTNKHETRISLFVSTRINTKHEFVKHEHGKPVSCSCRVIRVVFQIARNKAKRSKTMGDGDELHEEERFDVLTKTGLKTGISKPRSAVHRDGDYHRAVHVWIFAESTQQLLLQKRADHKDSWPGLWDISSAGHVSAGDTSLITASVTNGGKFIDNEFDDVYLVTTLSPIPLEAFTLQESEVSAVKYISIEEYKNLLVKEDPQYVPYNLDGQYGQLFDIITKRYQDNVEAQSISLQKKLNRYSPISLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035644`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035644

Location Chr08:26231220-26236008 (-)

Description Similar to NUDT3: Nudix hydrolase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79690`	Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035644 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008239 dipeptidyl-peptidase activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0016791 phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G79690

bth:BT_1846

caby:Cabys_2252

lin:lin0387

lmo:lmo0368

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.373

Rank 1 · LXL04_035644 · OH-1004

Plastid0.277

Rank 2 · LXL04_035644 · OH-1004

Peroxisome0.199

Rank 3 · LXL04_035644 · OH-1004

Mitochondrion0.164

Rank 4 · LXL04_035644 · OH-1004

Nucleus0.137

Rank 5 · LXL04_035644 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00293.35NUDIX107-154 aa

PF03571.22Peptidase_M49422-627 aa

PF30221.1DUF8614428-780 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035644	`PF00293.35`	NUDIX	107	154	1.3e-06	29.1
LXL04_035644	`PF03571.22`	Peptidase_M49	422	627	3.6e-10	39.6
LXL04_035644	`PF30221.1`	DUF8614	428	780	1.6e-12	47.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L831`	Arabidopsis thaliana	Nudix hydrolase 3	66.969%	Swiss-Prot	strong database homology

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