LXL04_035538 | RubberDandelionOmics

Gene overview

LXL04_035538

Reference: OH-1004 Chr: Chr08 Coordinates: 24312582-24319951 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2361 bp · LXL04_035538|LXL04_035538|OH1004|cDNA

ATGGCGTCTTCCCTGGGTTTCACCCATCTCAATGGCCTCACATCCTCCCACGTCGCTTATCCAGCGTCCCGCCGCCGTGCCAGTGGCGGAGCTAGAGTCGGTAGTTTGAAGATCTTTGCTTCAGAGTCGAAGCAACAAGAACCTGATCTGAGCGTCAACGTTAATGGTTTGCATATGCCCAATCCATTCGTCATCGGGTCGGGACCTCCAGGGACCAACTATAAAGTCATGAAGAAAGCTTTCGATGAAGGCTGGGGTGC...

CDS

Download CDS FASTA

2361 bp · LXL04_035538|LXL04_035538|OH1004|CDS

ATGGCGTCTTCCCTGGGTTTCACCCATCTCAATGGCCTCACATCCTCCCACGTCGCTTATCCAGCGTCCCGCCGCCGTGCCAGTGGCGGAGCTAGAGTCGGTAGTTTGAAGATCTTTGCTTCAGAGTCGAAGCAACAAGAACCTGATCTGAGCGTCAACGTTAATGGTTTGCATATGCCCAATCCATTCGTCATCGGGTCGGGACCTCCAGGGACCAACTATAAAGTCATGAAGAAAGCTTTCGATGAAGGCTGGGGTGC...

Protein

Download Protein FASTA

786 aa · LXL04_035538|LXL04_035538|OH1004|PROTEIN

MASSLGFTHLNGLTSSHVAYPASRRRASGGARVGSLKIFASESKQQEPDLSVNVNGLHMPNPFVIGSGPPGTNYKVMKKAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWQNIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELVDRVEQTGIDAIEVNFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVSLRSGCEGVAAINTIMSVM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035538`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035538

Location Chr08:24312582-24319951 (-)

Description Similar to PYD1: Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17810`	Involved in pyrimidine base degradation.	A functional analysis of the pyrimidine catabolic pathway in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2009.02843.x Pyrimidine degradation influences germination seedling growth and production of Arabidopsis seeds.2011 · DOI: 10.1093/jxb/err251

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035538 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006145 purine nucleobase catabolic process Biological Process

GO:0006208 pyrimidine nucleobase catabolic process Biological Process

GO:0006210 thymine catabolic process Biological Process

GO:0006212 uracil catabolic process Biological Process

GO:0006214 thymidine catabolic process Biological Process

GO:0006248 CMP catabolic process Biological Process

GO:0006249 dCMP catabolic process Biological Process

GO:0007584 response to nutrient Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0019483 beta-alanine biosynthetic process Biological Process

GO:0019860 uracil metabolic process Biological Process

KEGG gene cross-reference

ath:AT3G17810

ece:Z3402

ecj:JW2134

eco:b2147

ecoc:C3026_12030

ecs:ECs_3039

mmu:99586

stm:STM2187

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.783

Rank 1 · LXL04_035538 · OH-1004

Cytoplasm0.114

Rank 2 · LXL04_035538 · OH-1004

Mitochondrion0.094

Rank 3 · LXL04_035538 · OH-1004

Nucleus0.067

Rank 4 · LXL04_035538 · OH-1004

Cell membrane0.045

Rank 5 · LXL04_035538 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01180.28DHO_dh50-364 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035538	`PF01180.28`	DHO_dh	50	364	1.3e-35	123.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVI9`	Arabidopsis thaliana	Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic	76.303%	Swiss-Prot	moderate database homology

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