LXL04_035432 | RubberDandelionOmics

Gene overview

LXL04_035432

Reference: OH-1004 Chr: Chr08 Coordinates: 22433507-22440000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1044 bp · LXL04_035432|LXL04_035432|OH1004|cDNA

ATGGGACAGGTTTTTCGTAAGCTCTTCGATGCATTCTTCGGCAACAGCGAGATGCGGGTTGTCATGCTAGGGCTTGATGCAGCAGGGAAAACAACCATACTGTACAAGCTGCATATTGGAGAAGTTCTATCAACTGTCCCTACTATTGGTTTCAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTTCACGGTTTGGGATGTTGGTGGCCAAGAAAAGCTGCGGCCCTTGTGGAGGCATTACTTCAATGACACAAATGG...

CDS

Download CDS FASTA

1044 bp · LXL04_035432|LXL04_035432|OH1004|CDS

ATGGGACAGGTTTTTCGTAAGCTCTTCGATGCATTCTTCGGCAACAGCGAGATGCGGGTTGTCATGCTAGGGCTTGATGCAGCAGGGAAAACAACCATACTGTACAAGCTGCATATTGGAGAAGTTCTATCAACTGTCCCTACTATTGGTTTCAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTTCACGGTTTGGGATGTTGGTGGCCAAGAAAAGCTGCGGCCCTTGTGGAGGCATTACTTCAATGACACAAATGG...

Protein

Download Protein FASTA

347 aa · LXL04_035432|LXL04_035432|OH1004|PROTEIN

MGQVFRKLFDAFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNDTNGLIYVVDSLDRERIGRAKAEFQAIINDPFMTNCVILVFANKQDMKGAMTAMEVCEGLGMYELKNRKWHIQGTSMGQVFGKLFDAFFGNSEIQIVMLGLDAAGKTTILYKLQNREDLSTIVTVGLNQEKFQYKNVMFMVWDVGHQGRLEPLYKHYFQDTNGLIYVVDSLDRERLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035432`
TK1151 ID	TkA04G131240
OH-1004 ID	LXL04_035432
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 84.043 / OH-1004 45.533 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_035432`
Location	Chr08:22433507-22440000 (-)
Description	Similar to ADP-ribosylation factor
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035432` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006886 intracellular protein transport Biological Process GO:0007005 mitochondrion organization Biological Process GO:0007276 gamete generation Biological Process GO:0015031 protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0048259 regulation of receptor-mediated endocytosis Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0003924 GTPase activity Molecular Function
KEGG gene cross-reference	cbr:CBG_09004 cel:CELE_B0336.2 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.557

Rank 1 · LXL04_035432 · OH-1004

Golgi apparatus0.213

Rank 2 · LXL04_035432 · OH-1004

Endoplasmic reticulum0.175

Rank 3 · LXL04_035432 · OH-1004

Nucleus0.129

Rank 4 · LXL04_035432 · OH-1004

Lysosome / Vacuole0.124

Rank 5 · LXL04_035432 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025.28Arf6-160 aa

PF09439.17SRPRB16-139 aa

PF08477.20Roc19-129 aa

PF00071.29Ras19-132 aa

PF04670.19Gtr1_RagA20-131 aa

PF00503.27G-alpha44-130 aa

PF00025.28Arf166-335 aa

PF09439.17SRPRB177-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035432	`PF00025.28`	Arf	6	160	3e-125	415.0
LXL04_035432	`PF09439.17`	SRPRB	16	139	2.7e-20	73.2
LXL04_035432	`PF08477.20`	Roc	19	129	4.3e-24	85.8
LXL04_035432	`PF00071.29`	Ras	19	132	6.7e-20	72.0
LXL04_035432	`PF04670.19`	Gtr1_RagA	20	131	3.3e-16	60.1
LXL04_035432	`PF00503.27`	G-alpha	44	130	3.1e-24	86.4
LXL04_035432	`PF00025.28`	Arf	166	335	3e-125	415.0
LXL04_035432	`PF09439.17`	SRPRB	177	302	2.7e-20	73.2
LXL04_035432	`PF08477.20`	Roc	179	288	4.3e-24	85.8
LXL04_035432	`PF00071.29`	Ras	179	291	6.7e-20	72.0
LXL04_035432	`PF04670.19`	Gtr1_RagA	179	297	3.3e-16	60.1
LXL04_035432	`PF00503.27`	G-alpha	205	289	3.1e-24	86.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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