LXL04_035390 | RubberDandelionOmics

Gene overview

LXL04_035390

Reference: OH-1004 Chr: Chr08 Coordinates: 21781535-21785575 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2082 bp · LXL04_035390|LXL04_035390|OH1004|cDNA

ATGGCTTTTAATCGGAGACATATTGCAGACATATTGGAGATGGAAACTATCTCTACTAATCAGGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCGAACTGGATCATAATTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAACAATTTGGAGGCCATTGATGGTTCATTTGTTTGCTCCATTTGCAATCAACAATGCCGTTATCCCATCATACGGTATAAAATACATGTGCATGTTATTGACGGAAGTGG...

CDS

Download CDS FASTA

2082 bp · LXL04_035390|LXL04_035390|OH1004|CDS

ATGGCTTTTAATCGGAGACATATTGCAGACATATTGGAGATGGAAACTATCTCTACTAATCAGGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCGAACTGGATCATAATTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAACAATTTGGAGGCCATTGATGGTTCATTTGTTTGCTCCATTTGCAATCAACAATGCCGTTATCCCATCATACGGTATAAAATACATGTGCATGTTATTGACGGAAGTGG...

Protein

Download Protein FASTA

693 aa · LXL04_035390|LXL04_035390|OH1004|PROTEIN

MAFNRRHIADILEMETISTNQEDNEFTVLAKIVELDHNSGWCYASCSKCNNNLEAIDGSFVCSICNQQCRYPIIRYKIHVHVIDGSGRTTFVIFNQEAEKLLDSCANKFVNRLGIGSNQFPEEIIDLTGKIFIFKIKVALYNVTYECETYEVIKLYDVKFLIAYTSPKPFVGVFDPEALSAVQYNFNLDWLIQARLCRMWEAINFKNDNEIMGLEMVFVDDKGDSIQAYIRKNHMKRYKPMLEESEVYAIRNFRVAKSAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035390`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035390

Location Chr08:21781535-21785575 (+)

Description Similar to RPA1B: Replication protein A 70 kDa DNA-binding subunit B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08020`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release
`At5g61000`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release
`At2g06510`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	Replication protein A (AtRPA1a) is required for class I crossover formation but is dispensable for meiotic DNA break repair.2009 · DOI: 10.1038/emboj.2008.295 Arabidopsis replication protein A 70a is required for DNA damage response and telomere length homeostasis.2009 · DOI: 10.1093/pcp/pcp140

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0214100`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	Two types of replication protein A in seed plants.2005 · DOI: 10.1111/j.1742-4658.2005.04719.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035390 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006260 DNA replication Biological Process

GO:0006281 DNA repair Biological Process

GO:0006289 nucleotide-excision repair Biological Process

GO:0006312 mitotic recombination Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0007141 male meiosis I Biological Process

GO:0009555 pollen development Biological Process

GO:0010224 response to UV-B Biological Process

GO:0033260 nuclear DNA replication Biological Process

KEGG gene cross-reference

ath:AT2G06510

ath:AT5G08020

ath:AT5G61000

spo:2541158

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935

Rank 1 · LXL04_035390 · OH-1004

Cytoplasm0.122

Rank 2 · LXL04_035390 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_035390 · OH-1004

Mitochondrion0.017

Rank 4 · LXL04_035390 · OH-1004

Endoplasmic reticulum0.012

Rank 5 · LXL04_035390 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08646.17Rep_fac-A_C26-140 aa

PF02721.22DUF223189-287 aa

PF16900.12REPA_OB_2311-385 aa

PF08646.17Rep_fac-A_C485-622 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035390	`PF08646.17`	Rep_fac-A_C	26	140	6e-35	120.9
LXL04_035390	`PF02721.22`	DUF223	189	287	3.2e-17	63.5
LXL04_035390	`PF16900.12`	REPA_OB_2	311	385	2.7e-07	31.2
LXL04_035390	`PF08646.17`	Rep_fac-A_C	485	622	6e-35	120.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SD82`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit B	23.529%	Swiss-Prot	weak database homology
`Q9FME0`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit D	24.299%	Swiss-Prot	weak database homology
`Q9SKI4`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit A	24.444%	Swiss-Prot	weak database homology
`Q10Q08`	Oryza sativa subsp. japonica	Replication protein A 70 kDa DNA-binding subunit B	23.256%	Swiss-Prot	weak database homology

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