LXL04_035180 | RubberDandelionOmics

Gene overview

LXL04_035180

Reference: OH-1004 Chr: Chr08 Coordinates: 16816179-16817279 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1008 bp · LXL04_035180|LXL04_035180|OH1004|cDNA

ATGGTGTCTTCGCGGCCGTCATTGAGTAATTGCCGGCAATCTTCAAGTCATTCTGCAGGTAAATCAAACGCTATACTTGCTCGTCGGAGGAGAACAGAACTACGGCGGTTGAAAGTTTTATCAAACGGAGATGATTGTTTAGCGAAACGGAAGCCGTTTGAGAACACCGAGAAAGAACCCAATGACGATCTCCCGTACCATTCGTCAGTGATAGGCCGGAGAAGAGAAATGGAAGATGCTCTTTGTATAGAAAAACAGTT...

CDS

Download CDS FASTA

1008 bp · LXL04_035180|LXL04_035180|OH1004|CDS

ATGGTGTCTTCGCGGCCGTCATTGAGTAATTGCCGGCAATCTTCAAGTCATTCTGCAGGTAAATCAAACGCTATACTTGCTCGTCGGAGGAGAACAGAACTACGGCGGTTGAAAGTTTTATCAAACGGAGATGATTGTTTAGCGAAACGGAAGCCGTTTGAGAACACCGAGAAAGAACCCAATGACGATCTCCCGTACCATTCGTCAGTGATAGGCCGGAGAAGAGAAATGGAAGATGCTCTTTGTATAGAAAAACAGTT...

Protein

Download Protein FASTA

335 aa · LXL04_035180|LXL04_035180|OH1004|PROTEIN

MVSSRPSLSNCRQSSSHSAGKSNAILARRRRTELRRLKVLSNGDDCLAKRKPFENTEKEPNDDLPYHSSVIGRRREMEDALCIEKQFVGDENSIKFDFYGVYDGHGGSRVAYACRERLHKLLAAEMNIQNRSTTAEMNWENLMVESFTKMDEEVNETDVVDSMGSTAVVAVVGDKEIVVANCGDSRAVLSRGGFSVPLSVDHKPDRPDELERIECSGGRVIDWNGLRVLGVLATSRAIGDRQLKPYVIPKPEVTVNKRED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035180`
TK1151 ID	TkA04G157940
OH-1004 ID	LXL04_035180
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 77.313 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035180

Location Chr08:16816179-16817279 (+)

Description Similar to Os01g0656200: Probable protein phosphatase 2C 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29380`	Probable protein phosphatase 2C 24.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0656200`	Probable protein phosphatase 2C 8.	No verified direct reference in this release
`Os05g0572700`	Protein phosphatase that acts as a positive regulator of seed germination.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.2017 · DOI: 10.1007/s11103-016-0568-2
`Os09g0325700`	Involved in the regulation of abiotic stress responses.	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice.2013 · DOI: 10.1007/s12033-012-9614-8 ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0125168
`Os01g0846300`	Probable protein phosphatase 2C 9.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035180 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G29380

dosa:Os01g0656200

dosa:Os01g0846300

dosa:Os05g0572700

dosa:Os09g0325700

osa:4346736

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.650

Rank 1 · LXL04_035180 · OH-1004

Cytoplasm0.364

Rank 2 · LXL04_035180 · OH-1004

Cell membrane0.074

Rank 3 · LXL04_035180 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_035180 · OH-1004

Lysosome / Vacuole0.027

Rank 5 · LXL04_035180 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C71-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035180	`PF00481.27`	PP2C	71	326	3.1e-68	230.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZW21`	Arabidopsis thaliana	Probable protein phosphatase 2C 24	54.007%	Swiss-Prot	strong database homology
`Q5SN75`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 8	54.237%	Swiss-Prot	strong database homology
`Q65XK7`	Oryza sativa subsp. japonica	Protein phosphatase 2C 51	54.608%	Swiss-Prot	strong database homology
`Q0J2L7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 68	55.088%	Swiss-Prot	strong database homology
`Q5N9N2`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 9	45.858%	Swiss-Prot	moderate database homology

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