LXL04_035149 | RubberDandelionOmics

Gene overview

LXL04_035149

Reference: OH-1004 Chr: Chr08 Coordinates: 15679401-15685766 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3573 bp · LXL04_035149|LXL04_035149|OH1004|cDNA

ATGGACGGGAGGAGGATAACGGCGAGTCCACGTCCGTGCAATGGCCGGAGGGTGGTGGCGAAGAAGCGGCCATGTGGTGGTGTTGATGGGTTTGTGAATAGCGTTAAGAAGCTTCAAAGGAGAGAGATTTGTTCAAAGCGCGATCGTTCTTTTAGTATGTGTGATGCTCAGGAAAGGTTCAGAAATATCCGCTTACAGGAGGAGTATGATACCCATGATCCAAAGGGACACTGTTCCATGGTATTACCAtttctcaaaaa...

CDS

Download CDS FASTA

3573 bp · LXL04_035149|LXL04_035149|OH1004|CDS

ATGGACGGGAGGAGGATAACGGCGAGTCCACGTCCGTGCAATGGCCGGAGGGTGGTGGCGAAGAAGCGGCCATGTGGTGGTGTTGATGGGTTTGTGAATAGCGTTAAGAAGCTTCAAAGGAGAGAGATTTGTTCAAAGCGCGATCGTTCTTTTAGTATGTGTGATGCTCAGGAAAGGTTCAGAAATATCCGCTTACAGGAGGAGTATGATACCCATGATCCAAAGGGACACTGTTCCATGGTATTACCATTTCTCAAAAA...

Protein

Download Protein FASTA

1190 aa · LXL04_035149|LXL04_035149|OH1004|PROTEIN

MDGRRITASPRPCNGRRVVAKKRPCGGVDGFVNSVKKLQRREICSKRDRSFSMCDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLKKRSKIVEIVAARDIVFALAQSGICAAFSRETNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSFSSLKCRTTGIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTFSAQDSIYKVFDLKNYMMLYSISDKNVQEIKISPGIMLLIFNKSSGHVPLKILSIEDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035149`
TK1151 ID	TkA04G163120
OH-1004 ID	LXL04_035149
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.200
Protein coverage (%)	TK1151 97.425 / OH-1004 39.160 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035149

Location Chr08:15679401-15685766 (+)

Description Similar to Putative AC transposase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g42170`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0239150`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035149 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G42170

dosa:Os03g0733400

dosa:Os05g0239150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.879

Rank 1 · LXL04_035149 · OH-1004

Cytoplasm0.173

Rank 2 · LXL04_035149 · OH-1004

Mitochondrion0.027

Rank 3 · LXL04_035149 · OH-1004

Cell membrane0.020

Rank 4 · LXL04_035149 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_035149 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25463.2DUF789949-467 aa

PF02892.22zf-BED535-580 aa

PF27041.1ZBED1_RNase-like678-772 aa

PF27039.1ZBED1_RNase-like_helical776-877 aa

PF14372.13hAT-like_RNase-H919-1014 aa

PF05699.20Dimer_Tnp_hAT1076-1160 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035149	`PF25463.2`	DUF7899	49	467	1.1e-217	723.0
LXL04_035149	`PF02892.22`	zf-BED	535	580	3e-11	43.9
LXL04_035149	`PF27041.1`	ZBED1_RNase-like	678	772	4.8e-27	94.7
LXL04_035149	`PF27039.1`	ZBED1_RNase-like_helical	776	877	1.3e-28	99.9
LXL04_035149	`PF14372.13`	hAT-like_RNase-H	919	1014	2.7e-22	79.6
LXL04_035149	`PF05699.20`	Dimer_Tnp_hAT	1076	1160	2.4e-31	108.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2N5`	Arabidopsis thaliana	Zinc finger BED domain-containing protein DAYSLEEPER	28.313%	Swiss-Prot	weak database homology
`Q6AVI0`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 2	29.080%	Swiss-Prot	weak database homology
`B9FJG3`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 1	29.559%	Swiss-Prot	weak database homology

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