LXL04_035140 | RubberDandelionOmics

Gene overview

LXL04_035140

Reference: OH-1004 Chr: Chr08 Coordinates: 15410631-15413135 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1371 bp · LXL04_035140|LXL04_035140|OH1004|cDNA

ATGGCGTTTCTCTGTGAACCGTCATCGTCGGCCTCTTTCCTCTCCAGTAATTCATCATCATATTCACAGTCTCCGTTTCAAGTCAAGCTGCTTCATCATAATTTCTCTCCTGCACCAAAATTTGGGCAAACAATTCTTCTTATACACCACTGTACATCAAAACACACATCTACAGTCTGCACCGCAGCAATTGATCCACCGCCTCCACCGGAGCAGAACCAGTCACCTTCTAGCGACGCTAATGTTTCCCTGGAAGTTGC...

CDS

Download CDS FASTA

1371 bp · LXL04_035140|LXL04_035140|OH1004|CDS

ATGGCGTTTCTCTGTGAACCGTCATCGTCGGCCTCTTTCCTCTCCAGTAATTCATCATCATATTCACAGTCTCCGTTTCAAGTCAAGCTGCTTCATCATAATTTCTCTCCTGCACCAAAATTTGGGCAAACAATTCTTCTTATACACCACTGTACATCAAAACACACATCTACAGTCTGCACCGCAGCAATTGATCCACCGCCTCCACCGGAGCAGAACCAGTCACCTTCTAGCGACGCTAATGTTTCCCTGGAAGTTGC...

Protein

Download Protein FASTA

456 aa · LXL04_035140|LXL04_035140|OH1004|PROTEIN

MAFLCEPSSSASFLSSNSSSYSQSPFQVKLLHHNFSPAPKFGQTILLIHHCTSKHTSTVCTAAIDPPPPPEQNQSPSSDANVSLEVASTTRDRQKIVRVAWEKLVRWSRSLRSKAKTDVLERTNKVVVLGGGSFGTAMASHVAGRKTQMEVNMLVRDPQICQSINQNHCNGKYFPDHKLPENVTATTDAKAAFSNADFCLHAVPVQFSASFLEDVAEYVEPGLPFISLSKGLELNTLRMMSQIIPQTLRNSRQPFVALSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035140`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035140

Location Chr08:15410631-15413135 (+)

Description Similar to GLY1: Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40690`	Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids.	The Arabidopsis thaliana dihydroxyacetone phosphate reductase gene SUPPRESSSOR OF FATTY ACID DESATURASE DEFICIENCY1 is required for glycerolipid metabolism and for the activation of systemic acquired resistance.2004 · DOI: 10.1105/tpc.016907 Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid.2008 · DOI: 10.1111/j.1365-313x.2007.03400.x Biochemical and Molecular-Genetic Characterization of SFD1's Involvement in Lipid Metabolism and Defense Signaling.2012 · DOI: 10.3389/fpls.2012.00026

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0229800`	Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035140 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006072 glycerol-3-phosphate metabolic process Biological Process

GO:0006650 glycerophospholipid metabolic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0045017 glycerolipid biosynthetic process Biological Process

GO:0046167 glycerol-3-phosphate biosynthetic process Biological Process

GO:0046168 glycerol-3-phosphate catabolic process Biological Process

GO:0046486 glycerolipid metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT2G40690

dma:DMR_11830

dosa:Os07g0229800

lbj:LBJ_0395

lic:LIC_13145

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.946

Rank 1 · LXL04_035140 · OH-1004

Mitochondrion0.077

Rank 2 · LXL04_035140 · OH-1004

Cytoplasm0.022

Rank 3 · LXL04_035140 · OH-1004

Nucleus0.019

Rank 4 · LXL04_035140 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_035140 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01210.30NAD_Gly3P_dh_N125-284 aa

PF07479.20NAD_Gly3P_dh_C304-444 aa

PF20618.4GPD_NAD_C_bact364-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035140	`PF01210.30`	NAD_Gly3P_dh_N	125	284	1.6e-43	149.2
LXL04_035140	`PF07479.20`	NAD_Gly3P_dh_C	304	444	2e-49	168.2
LXL04_035140	`PF20618.4`	GPD_NAD_C_bact	364	430	2e-21	77.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949Q0`	Arabidopsis thaliana	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic	85.484%	Swiss-Prot	strong database homology
`Q8H2J9`	Oryza sativa subsp. japonica	Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic	77.869%	Swiss-Prot	strong database homology

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