LXL04_035111 | RubberDandelionOmics

Gene overview

LXL04_035111

Reference: OH-1004 Chr: Chr08 Coordinates: 14733404-14734237 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

834 bp · LXL04_035111|LXL04_035111|OH1004|cDNA

ATGGGTCGTGCAAAGCTAGATATGAAATTCATAAAGAAAGAGAAGACCCGAAACACGACCTTCGAGAAAAGAAAAAATGGAATGTTAAAGAAAGCTGACGAATTCAAAACTCTTTGCGATGTTGACACGGCTGTGATCATATACCCTCCGAACTCTAAAACGCCGGAGATTTGGCCGGAAAACCCTGATGTAGTCAAGAACTCCATCGCGTCTTACAAAGCAAAATACGAAAACGGGAAGCGAAGTTATGGCGTCATAGA...

CDS

Download CDS FASTA

834 bp · LXL04_035111|LXL04_035111|OH1004|CDS

ATGGGTCGTGCAAAGCTAGATATGAAATTCATAAAGAAAGAGAAGACCCGAAACACGACCTTCGAGAAAAGAAAAAATGGAATGTTAAAGAAAGCTGACGAATTCAAAACTCTTTGCGATGTTGACACGGCTGTGATCATATACCCTCCGAACTCTAAAACGCCGGAGATTTGGCCGGAAAACCCTGATGTAGTCAAGAACTCCATCGCGTCTTACAAAGCAAAATACGAAAACGGGAAGCGAAGTTATGGCGTCATAGA...

Protein

Download Protein FASTA

277 aa · LXL04_035111|LXL04_035111|OH1004|PROTEIN

MGRAKLDMKFIKKEKTRNTTFEKRKNGMLKKADEFKTLCDVDTAVIIYPPNSKTPEIWPENPDVVKNSIASYKAKYENGKRSYGVIDYFEERKKKMEDELVKARKRNMEAKYATWFDELDGLSEGELRHFAMGLEKKENLVRDYLEFQKRSRSIEPVDYKFQLHAGGSHLQGVDQVQMVNHHLMNHGAVGWFDGAPTTSSFIPEKNEVGHGYGNYNIPLFEGSVVNGYSIPWLMFQPPPVVQGGVMPELAVQEFDSQLNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035111`
TK1151 ID	TkA04G166780
OH-1004 ID	LXL04_035111
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 97.473 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035111

Location Chr08:14733404-14734237 (+)

Description Similar to AGL82: Agamous-like MADS-box protein AGL82

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58890`	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2Z9Q7`	Probable transcription factor.	No verified direct reference in this release
`Os10g0536100`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035111 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0048316 seed development Biological Process

GO:0050793 regulation of developmental process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT5G58890

dosa:Os10g0536100

vvi:100232870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981

Rank 1 · LXL04_035111 · OH-1004

Cytoplasm0.075

Rank 2 · LXL04_035111 · OH-1004

Cell membrane0.018

Rank 3 · LXL04_035111 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_035111 · OH-1004

Plastid0.008

Rank 5 · LXL04_035111 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00319.24SRF-TF10-53 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035111	`PF00319.24`	SRF-TF	10	53	1.8e-16	60.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIM0`	Arabidopsis thaliana	Agamous-like MADS-box protein AGL82	34.286%	Swiss-Prot	weak database homology
`A2Z9Q7`	Oryza sativa subsp. indica	MADS-box transcription factor 56	27.962%	Swiss-Prot	weak database homology
`P0C5B2`	Oryza sativa subsp. japonica	MADS-box transcription factor 56	28.986%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card