Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1786 bp · LXL04_035019|LXL04_035019|OH1004|cDNA
TATATCGACTATCGAGCGAACTGTAAAAACAGAAAGTATATCTCTAGTCTCTACGACCAGCACCCCACCCCCGAAGCATCACTCCCTCGAGGTCAACGCACAGTGCTCCTATCTTCCCCCAAAAATGTCCGCCAAATTCCCTATTCCAAACCCTAGCCCACTGCTACTGTTCTTCACCATCCTCTCCATCTTGTTCTATCTGACACCAATCATTAATTCAAGAACCCTGCGAACAGTCGGTTCCTCTTCACACTTATCCG...
1662 bp · LXL04_035019|LXL04_035019|OH1004|CDS
ATGTCCGCCAAATTCCCTATTCCAAACCCTAGCCCACTGCTACTGTTCTTCACCATCCTCTCCATCTTGTTCTATCTGACACCAATCATTAATTCAAGAACCCTGCGAACAGTCGGTTCCTCTTCACACTTATCCGACGATTCATCCATCACTTACCTATGGCCGCTGCCGTCGGAATTCACATACGGTAATGAAACCCTGGTGGTAGATCCTAGTCTATCTCTCTCTCTTTTTGGCAATGGCGGAAATTCTGCTATCGT...
Protein
Download Protein FASTA553 aa · LXL04_035019|LXL04_035019|OH1004|PROTEIN
MSAKFPIPNPSPLLLFFTILSILFYLTPIINSRTLRTVGSSSHLSDDSSITYLWPLPSEFTYGNETLVVDPSLSLSLFGNGGNSAIVREAFERYRTIIFKHVGSSKFGMRDLGYDITKLTVIVHSDNEELQLGVDESYTLLVAKNNGLSVIGEVTVEANTVYGALRGLETFSQLCGFDYGTKTVQIYKAPWFIKDKPRFAFRGLLLDTSRHYYPVDIIKQIIESMSYVKLNVLHWHIIDEESFPLEVPAYPKLWKGAYTK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035019 |
|---|---|
| TK1151 ID | TkA04G180120 |
| OH-1004 ID | LXL04_035019 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 95.000 |
| Protein coverage (%) | TK1151 87.328 / OH-1004 57.143Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035019 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:11410713-11414410 (+) | |||||||||
| Description | Similar to HEXO1: Beta-hexosaminidase 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006491 N-glycan processing Biological Process GO:0030203 glycosaminoglycan metabolic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005764 lysosome Cellular Component GO:0005773 vacuole Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G65590 ath:AT3G55260 ddi:DDB_G0287033 ddi:DDB_G0287597 ddi:DDB_G0287659 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14845.12Glycohydro_20b253-174 aaPF00728.29Glyco_hydro_20199-503 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035019 | PF14845.12 | Glycohydro_20b2 | 53 | 174 | 4.5e-23 | 83.1 |
| LXL04_035019 | PF00728.29 | Glyco_hydro_20 | 199 | 503 | 3.9e-81 | 273.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.