Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2274 bp · LXL04_034786|LXL04_034786|OH1004|cDNA
ATGAAGTTGTTTAGAGGTCTCCTTACCCTCTTAATTATAATTGTTTTCTGTACCCTCCAGGTGTCTTCTTTAGCCATTAATAGCGAAAAGTCTTATATAGTCTACTTGGGAGGACATGCTAATGGACTTGAAGCCTCTGCGATTAAAAAGTCTCACTTTGAGTTTCTTGGCTCAATTTTAGGGAGCAAAGAGAGGGCTGATGAGGCAATGATCTATTCATACAATAAGCAGATTAATGGCTTCTCTGCTATGCTTGATAA...
2274 bp · LXL04_034786|LXL04_034786|OH1004|CDS
ATGAAGTTGTTTAGAGGTCTCCTTACCCTCTTAATTATAATTGTTTTCTGTACCCTCCAGGTGTCTTCTTTAGCCATTAATAGCGAAAAGTCTTATATAGTCTACTTGGGAGGACATGCTAATGGACTTGAAGCCTCTGCGATTAAAAAGTCTCACTTTGAGTTTCTTGGCTCAATTTTAGGGAGCAAAGAGAGGGCTGATGAGGCAATGATCTATTCATACAATAAGCAGATTAATGGCTTCTCTGCTATGCTTGATAA...
Protein
Download Protein FASTA757 aa · LXL04_034786|LXL04_034786|OH1004|PROTEIN
MKLFRGLLTLLIIIVFCTLQVSSLAINSEKSYIVYLGGHANGLEASAIKKSHFEFLGSILGSKERADEAMIYSYNKQINGFSAMLDKEAAAKLAEHPDVVSVFPNRVRRLHTTHSWDFLKLEKNGVIDSSSLWKKARFGENIIIANLDTGVWPESKSFSDDGYGPIPSRWKGGCENETSVPCNKKLIGAKYYNKGYIALSGPLNPSMNSARDHEGHGSHTLSTAGGNFVGGVSINEIGNGTAKGGSPRARVASYKVCWPP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034786 |
|---|---|
| TK1151 ID | TkA08G437120 |
| OH-1004 ID | LXL04_034786 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034786 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:116707394-116710605 (-) | |||||||||||||||
| Description | Similar to SBT5.4: Subtilisin-like protease SBT5.4 | |||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0009609 response to symbiotic bacterium Biological Process GO:0009610 response to symbiotic fungus Biological Process GO:0009733 response to auxin Biological Process GO:0010074 maintenance of meristem identity Biological Process GO:0010102 lateral root morphogenesis Biological Process GO:0010150 leaf senescence Biological Process GO:0010214 seed coat development Biological Process GO:0010223 secondary shoot formation Biological Process GO:0080001 mucilage extrusion from seed coat Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component | |||||||||||||||
| KEGG gene cross-reference | ath:AT2G04160 ath:AT3G14067 ath:AT5G59810 ath:AT5G67360 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05922.22Inhibitor_I931-111 aaPF21864.2MORF_dom50-106 aaPF00082.28Peptidase_S8139-584 aaPF02225.28PA396-469 aaPF17766.8fn3_6660-755 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034786 | PF05922.22 | Inhibitor_I9 | 31 | 111 | 3.5e-19 | 70.0 |
| LXL04_034786 | PF21864.2 | MORF_dom | 50 | 106 | 9.4e-06 | 26.1 |
| LXL04_034786 | PF00082.28 | Peptidase_S8 | 139 | 584 | 9.4e-41 | 140.7 |
| LXL04_034786 | PF02225.28 | PA | 396 | 469 | 5.1e-15 | 56.1 |
| LXL04_034786 | PF17766.8 | fn3_6 | 660 | 755 | 1.3e-29 | 103.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
F4JXC5 | Arabidopsis thaliana | Subtilisin-like protease SBT5.4 | 62.000% | Swiss-Prot | strong database homology |
Q9ZSP5 | Arabidopsis thaliana | Subtilisin-like protease SBT5.3 | 55.393% | Swiss-Prot | strong database homology |
O65351 | Arabidopsis thaliana | Subtilisin-like protease SBT1.7 | 44.661% | Swiss-Prot | moderate database homology |
Q9LVJ1 | Arabidopsis thaliana | Subtilisin-like protease SBT1.4 | 41.846% | Swiss-Prot | moderate database homology |