LXL04_034778 | RubberDandelionOmics

Gene overview

LXL04_034778

Reference: OH-1004 Chr: Chr07 Coordinates: 116438823-116440861 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · LXL04_034778|LXL04_034778|OH1004|cDNA

ATGACCGAAGTTGAATCAACCACAGTTTGCCAGCCCTTATCTCTCACCAACGTCCGGCACCTCTTGGATTCAGTGGATGCCTTCCTCCTCGACTGCGATGGTGTAATATGGAAGGGAGATACACTGATTGATGGCGTTCCACGAACATTGGAGCTGCTTAGATCTAAGGGGAAGAAGTTGGTTTTCGTGACCAATAATTCAATGAAGTCCAGAAAACAGTATGCTCTCAAGTTCCAGTCCCTTGGAATTCCAGTCACCGA...

CDS

Download CDS FASTA

921 bp · LXL04_034778|LXL04_034778|OH1004|CDS

ATGACCGAAGTTGAATCAACCACAGTTTGCCAGCCCTTATCTCTCACCAACGTCCGGCACCTCTTGGATTCAGTGGATGCCTTCCTCCTCGACTGCGATGGTGTAATATGGAAGGGAGATACACTGATTGATGGCGTTCCACGAACATTGGAGCTGCTTAGATCTAAGGGGAAGAAGTTGGTTTTCGTGACCAATAATTCAATGAAGTCCAGAAAACAGTATGCTCTCAAGTTCCAGTCCCTTGGAATTCCAGTCACCGA...

Protein

Download Protein FASTA

306 aa · LXL04_034778|LXL04_034778|OH1004|PROTEIN

MTEVESTTVCQPLSLTNVRHLLDSVDAFLLDCDGVIWKGDTLIDGVPRTLELLRSKGKKLVFVTNNSMKSRKQYALKFQSLGIPVTEEEIFSSSFAAAMYLKEKEFPPEKKVYVIGGEGILEELKLAGFTGLGGPGDGAKTVQLKANTLFEHDKNVGAVVVGLDPNINYYKLQYATLCIRENPGCLFIATNRDATGNMTDLQEWPGAGCMVGAVCGSTEKEPIVVGKPSTFLMDFLQNKYNIPTCRMCMVGDRLDTDILF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034778`
TK1151 ID	TkA08G435790
OH-1004 ID	LXL04_034778
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034778

Location Chr07:116438823-116440861 (-)

Description Similar to PGLP2: Phosphoglycolate phosphatase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47760`	Dephosphorylates 2-phosphoglycolate, but does not contribute to photorespiratory metabolism.	Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.2007 · DOI: 10.1104/pp.107.099192
`At5g36790`	Photorespiratory enzyme that dephosphorylates the 2-phosphoglycolate produced by the RuBisCO oxygenation reaction.	No verified direct reference in this release
`At5g36700`	Photorespiratory enzyme that dephosphorylates the 2- phosphoglycolate produced by the RuBisCO oxygenation reaction.	Identification of the photorespiratory 2-phosphoglycolate phosphatase, PGLP1, in Arabidopsis.2007 · DOI: 10.1104/pp.107.099192

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034778 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009853 photorespiration Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0008967 phosphoglycolate phosphatase activity Molecular Function

GO:0016791 phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G36700

ath:AT5G36790

ath:AT5G47760

pbe:PBANKA_1421300

pfa:PF3D7_0715000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.475

Rank 1 · LXL04_034778 · OH-1004

Mitochondrion0.449

Rank 2 · LXL04_034778 · OH-1004

Nucleus0.252

Rank 3 · LXL04_034778 · OH-1004

Cell membrane0.116

Rank 4 · LXL04_034778 · OH-1004

Endoplasmic reticulum0.063

Rank 5 · LXL04_034778 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00702.33Hydrolase25-265 aa

PF13344.13Hydrolase_628-130 aa

PF13242.13Hydrolase_like225-298 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034778	`PF00702.33`	Hydrolase	25	265	6.6e-15	56.7
LXL04_034778	`PF13344.13`	Hydrolase_6	28	130	5.2e-35	120.3
LXL04_034778	`PF13242.13`	Hydrolase_like	225	298	2.2e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWU0`	Arabidopsis thaliana	Phosphoglycolate phosphatase 2	74.747%	Swiss-Prot	strong database homology
`P0DKC4`	Arabidopsis thaliana	Phosphoglycolate phosphatase 1B, chloroplastic	67.596%	Swiss-Prot	strong database homology
`P0DKC3`	Arabidopsis thaliana	Phosphoglycolate phosphatase 1A, chloroplastic	67.596%	Swiss-Prot	strong database homology

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