LXL04_034696 | RubberDandelionOmics

Gene overview

LXL04_034696

Reference: OH-1004 Chr: Chr07 Coordinates: 113993289-113998831 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1260 bp · LXL04_034696|LXL04_034696|OH1004|cDNA

ATGCAGAAGCAATCACAAAATATGGAAGAACAAGTTGAAATGGTAGGAAGGGCATTTGTGGAACATTATTATCATTTATTTGATACTGATAGGTCTTCTCTTGCTTCCCTCTGCCATCAATCCTCCATGTTGACTTTTGAAGGTCAAAATCTACAAGGCGGTAATGTTATATGTTCCAAAATAAAACAACTACCTTTCGACAAATGTCATCATCTCATTAGCACTATCGACTCGCAACCATCATCATTTGCTGGTGGCAT...

CDS

Download CDS FASTA

1260 bp · LXL04_034696|LXL04_034696|OH1004|CDS

ATGCAGAAGCAATCACAAAATATGGAAGAACAAGTTGAAATGGTAGGAAGGGCATTTGTGGAACATTATTATCATTTATTTGATACTGATAGGTCTTCTCTTGCTTCCCTCTGCCATCAATCCTCCATGTTGACTTTTGAAGGTCAAAATCTACAAGGCGGTAATGTTATATGTTCCAAAATAAAACAACTACCTTTCGACAAATGTCATCATCTCATTAGCACTATCGACTCGCAACCATCATCATTTGCTGGTGGCAT...

Protein

Download Protein FASTA

419 aa · LXL04_034696|LXL04_034696|OH1004|PROTEIN

MQKQSQNMEEQVEMVGRAFVEHYYHLFDTDRSSLASLCHQSSMLTFEGQNLQGGNVICSKIKQLPFDKCHHLISTIDSQPSSFAGGIVVFVSGSLQLADEEHPLRFSQMFHLIPTPQGSFYVQNDMFRLNYGLKINVQKSKILGICVPFNEVERVAGVLGCVAIKTPFVYPGVKVGAGMSKLQAWDGTHKTFCFADIVQACSQLRSKGLNLLGYCKRSVGDGRATWFSKNLWNGEMLLKDRFPRLFLLENAQEALVAEKC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034696`
TK1151 ID	TkA08G424340
OH-1004 ID	LXL04_034696
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 32.697 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034696

Location Chr07:113993289-113998831 (-)

Description Similar to NTF2B: Nuclear transport factor 2B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g27970`	Facilitates protein transport into the nucleus.	Identification and characterization of the Arabidopsis orthologs of nuclear transport factor 2, the nuclear import factor of ran.2006 · DOI: 10.1104/pp.105.075499
`At1g27310`	Facilitates protein transport into the nucleus.	Identification and characterization of the Arabidopsis orthologs of nuclear transport factor 2, the nuclear import factor of ran.2006 · DOI: 10.1104/pp.105.075499

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0532300`	Facilitates protein transport into the nucleus.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034696 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006606 protein import into nucleus Biological Process

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0031965 nuclear membrane Cellular Component

GO:0044613 nuclear pore central transport channel Cellular Component

GO:0031267 small GTPase binding Molecular Function

GO:0061608 nuclear import signal receptor activity Molecular Function

KEGG gene cross-reference

ath:AT1G27310

ath:AT1G27970

cgr:2888732

dosa:Os08g0532300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608

Rank 1 · LXL04_034696 · OH-1004

Nucleus0.450

Rank 2 · LXL04_034696 · OH-1004

Cell membrane0.069

Rank 3 · LXL04_034696 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_034696 · OH-1004

Mitochondrion0.043

Rank 5 · LXL04_034696 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02136.27NTF215-129 aa

PF13966.12zf-RVT297-363 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034696	`PF02136.27`	NTF2	15	129	6.8e-33	114.3
LXL04_034696	`PF13966.12`	zf-RVT	297	363	5.8e-14	53.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C7F5`	Arabidopsis thaliana	Nuclear transport factor 2B	64.167%	Swiss-Prot	weak database homology
`Q9FZK4`	Arabidopsis thaliana	Nuclear transport factor 2A	59.664%	Swiss-Prot	weak database homology
`Q9XJ54`	Oryza sativa subsp. japonica	Nuclear transport factor 2	60.000%	Swiss-Prot	weak database homology

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