LXL04_034665 | RubberDandelionOmics

Gene overview

LXL04_034665

Reference: OH-1004 Chr: Chr07 Coordinates: 112934871-112938739 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2028 bp · LXL04_034665|LXL04_034665|OH1004|cDNA

AGTGTCTATATCTCCCTTGTCCTATGGATATATATAACCCAAAAGAAACTTTTAGAACTCCAGAGAAAGGCACATAAAACTTTCCATTTCGTCTCAAAAAGTATGTTTCTCGCCCTTCATTTTGTTTGGATCTCAGTTTTAACATCGACAGCCATTGCCGCTGAATTTCATACACATTACTGTGGTCACAACACAACCGACTACAGAAACACCAGTTACAATATAAACCGGATCCAACTCCTAGATTCACTTGTTTCAGT...

CDS

Download CDS FASTA

1926 bp · LXL04_034665|LXL04_034665|OH1004|CDS

ATGTTTCTCGCCCTTCATTTTGTTTGGATCTCAGTTTTAACATCGACAGCCATTGCCGCTGAATTTCATACACATTACTGTGGTCACAACACAACCGACTACAGAAACACCAGTTACAATATAAACCGGATCCAACTCCTAGATTCACTTGTTTCAGTTAACGACGTCAATGGTACCAAATTTGCATATAAGAGCGCCGGAAATAGCCATCCAGACATTGCATACGGTGTCTATCTTTGTCGGGAAGACGTTTTTCCCAA...

Protein

Download Protein FASTA

641 aa · LXL04_034665|LXL04_034665|OH1004|PROTEIN

MFLALHFVWISVLTSTAIAAEFHTHYCGHNTTDYRNTSYNINRIQLLDSLVSVNDVNGTKFAYKSAGNSHPDIAYGVYLCREDVFPNEYCRNCLLEARDDINNTCPSSKDAVFWNDDCMLRYANYSMLSIMDSNIFLHECNGNNISEKVSEQSRFWESTRDFMKGLAKKASKKSFAFGELRYSDNQTVYGYVQCTPDLSGFDCGRCLQVSVDGLGDYCHGKQGARVLTPSCNVRYETYKFLRFSSSGKNKFSTYIIAAVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034665`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034665

Location Chr07:112934871-112938739 (-)

Description Similar to CRK15: Cysteine-rich receptor-like protein kinase 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release
`At4g23180`	Cysteine-rich receptor-like protein kinase 10.	No verified direct reference in this release
`At4g05200`	Cysteine-rich receptor-like protein kinase 25.	No verified direct reference in this release
`At4g23140`	Cysteine-rich receptor-like protein kinase 6.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034665 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G23140

ath:AT4G23180

ath:AT4G23230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.872

Rank 1 · LXL04_034665 · OH-1004

Endoplasmic reticulum0.081

Rank 2 · LXL04_034665 · OH-1004

Cytoplasm0.072

Rank 3 · LXL04_034665 · OH-1004

Nucleus0.043

Rank 4 · LXL04_034665 · OH-1004

Lysosome / Vacuole0.027

Rank 5 · LXL04_034665 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung27-125 aa

PF01657.23Stress-antifung140-238 aa

PF00069.32Pkinase318-524 aa

PF07714.24PK_Tyr_Ser-Thr319-584 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034665	`PF01657.23`	Stress-antifung	27	125	1e-32	113.4
LXL04_034665	`PF01657.23`	Stress-antifung	140	238	1e-32	113.4
LXL04_034665	`PF00069.32`	Pkinase	318	524	1.9e-42	146.2
LXL04_034665	`PF07714.24`	PK_Tyr_Ser-Thr	319	584	1.9e-46	159.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W4G6`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 15	48.852%	Swiss-Prot	moderate database homology
`Q8GYA4`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 10	47.975%	Swiss-Prot	moderate database homology
`Q9M0X5`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 25	44.709%	Swiss-Prot	moderate database homology
`Q9C5S9`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 6	45.872%	Swiss-Prot	moderate database homology
`O65468`	Arabidopsis thaliana	Cysteine-rich receptor-like protein kinase 8	45.568%	Swiss-Prot	moderate database homology

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