LXL04_034623 | RubberDandelionOmics

Gene overview

LXL04_034623

Reference: OH-1004 Chr: Chr07 Coordinates: 111079724-111095207 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1575 bp · LXL04_034623|LXL04_034623|OH1004|cDNA

ATGCAAACTTTTGGTCCATATGCGGACTATATGACCATGTTGACGGGTTCACCACAAATACGAAACCAATCATCCTTCGACCCCACGACATCTCCTCTAATTCAACTCCACAACACTGGATTTCAACAGCACTATCATCAAACATCTCCCACTCGACCACAATTTGGTGGATCTTCATCTATGTCAATGCCTCCATTCCATTCACAACTCTCTTCAACCCAAGATGTCGTGTATGAGACACATATGGAACCCCCTCaatc...

CDS

Download CDS FASTA

1575 bp · LXL04_034623|LXL04_034623|OH1004|CDS

ATGCAAACTTTTGGTCCATATGCGGACTATATGACCATGTTGACGGGTTCACCACAAATACGAAACCAATCATCCTTCGACCCCACGACATCTCCTCTAATTCAACTCCACAACACTGGATTTCAACAGCACTATCATCAAACATCTCCCACTCGACCACAATTTGGTGGATCTTCATCTATGTCAATGCCTCCATTCCATTCACAACTCTCTTCAACCCAAGATGTCGTGTATGAGACACATATGGAACCCCCTCAATC...

Protein

Download Protein FASTA

524 aa · LXL04_034623|LXL04_034623|OH1004|PROTEIN

MQTFGPYADYMTMLTGSPQIRNQSSFDPTTSPLIQLHNTGFQQHYHQTSPTRPQFGGSSSMSMPPFHSQLSSTQDVVYETHMEPPQSRKQRKGRKGKTTTALNGPLIWCSTSKNSIQGNSQKQDTYWESIRSFNDMNVLLAAKEEYGRTEGHEFTLEKVWERIRFDSKWFNVASVTTHTRSTSGSKRFRAERSYDVSDAHINIDLMQGRMCFRINKIFPRLIRVHRWEDKEKKAMRRRRLEMQEKQVEQAKLLHHLTLLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034623`
TK1151 ID	TkA08G413530
OH-1004 ID	LXL04_034623
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	65.800
Protein coverage (%)	TK1151 88.235 / OH-1004 44.656 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034623

Location Chr07:111079724-111095207 (-)

Description Similar to ADS3: Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15850`	Fatty acid desaturase involved in the first desaturation step leading to the formation of hexadeca 7,10,13-trienoic acid (16:3(7Z,10Z,13Z)), the major functional components of thylakoid membranes.	Switching desaturase enzyme specificity by alternate subcellular targeting.2004 · DOI: 10.1073/pnas.0402200101 Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype.2004 · DOI: 10.1104/pp.104.052951
`At3g15870`	Probable lipid desaturase ADS3.2, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034623 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006636 unsaturated fatty acid biosynthetic process Biological Process

GO:0010205 photoinhibition Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0102843 palmitoyl-[glycerolipid] 7-desaturase activity Molecular Function

KEGG gene cross-reference

ag:AAG28599

ath:AT3G15850

ath:AT3G15870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.279

Rank 1 · LXL04_034623 · OH-1004

Cytoplasm0.276

Rank 2 · LXL04_034623 · OH-1004

Nucleus0.212

Rank 3 · LXL04_034623 · OH-1004

Peroxisome0.123

Rank 4 · LXL04_034623 · OH-1004

Mitochondrion0.098

Rank 5 · LXL04_034623 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00487.31FA_desaturase313-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034623	`PF00487.31`	FA_desaturase	313	498	4e-11	43.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q949X0`	Arabidopsis thaliana	Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic	64.352%	Swiss-Prot	weak database homology
`Q9LVZ3`	Arabidopsis thaliana	Probable lipid desaturase ADS3.2, chloroplastic	60.563%	Swiss-Prot	weak database homology

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