LXL04_034456 | RubberDandelionOmics

Gene overview

LXL04_034456

Reference: OH-1004 Chr: Chr07 Coordinates: 101481529-101485947 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_034456|LXL04_034456|OH1004|cDNA

ATGGCATCTTCGGCGTCGTTGCTTCATTACACAACACCTCCCGTGATTAATCTTCGAAGAAGCGCTAATTTAGGTTCATCGCCCTCCAATCCAACACCGAATTCGccgtcttcttcttcatctaCGTGTTCTTCGTCCTCGTCCTGGCCGTGTTGTCAGGGATTTTCGTGGACTTTCTCCAACTGTTTTGGCATACACGCGGTCTGGAAAAATCAAAGCTTTAAAGCTCAAGCTATGAGCACAACCCAAGGGCATTTTGT...

CDS

Download CDS FASTA

1572 bp · LXL04_034456|LXL04_034456|OH1004|CDS

ATGGCATCTTCGGCGTCGTTGCTTCATTACACAACACCTCCCGTGATTAATCTTCGAAGAAGCGCTAATTTAGGTTCATCGCCCTCCAATCCAACACCGAATTCGCCGTCTTCTTCTTCATCTACGTGTTCTTCGTCCTCGTCCTGGCCGTGTTGTCAGGGATTTTCGTGGACTTTCTCCAACTGTTTTGGCATACACGCGGTCTGGAAAAATCAAAGCTTTAAAGCTCAAGCTATGAGCACAACCCAAGGGCATTTTGT...

Protein

Download Protein FASTA

523 aa · LXL04_034456|LXL04_034456|OH1004|PROTEIN

MASSASLLHYTTPPVINLRRSANLGSSPSNPTPNSPSSSSSTCSSSSSWPCCQGFSWTFSNCFGIHAVWKNQSFKAQAMSTTQGHFVSSTSGVKEEPDHLLVLVHGIYASPNDWRYVEGELKRRLGRHFLIYASSSNTYSKTFGGIDGAGKRLADEVKQIVKSRDSLKRISFLAHSLGGLIARYAVADLYMHTNNNNNSNNNNNDNATSSAIDNNNNNNNNNNNNNNNKVDGTIAGLEGINFITLATPHLGVRGNKQLPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034456`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_034456`
Location	Chr07:101481529-101485947 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034456` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006629 lipid metabolic process Biological Process
KEGG gene cross-reference	mmu:70363 xla:447696 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.890

Rank 1 · LXL04_034456 · OH-1004

Mitochondrion0.070

Rank 2 · LXL04_034456 · OH-1004

Cytoplasm0.049

Rank 3 · LXL04_034456 · OH-1004

Nucleus0.044

Rank 4 · LXL04_034456 · OH-1004

Cell membrane0.034

Rank 5 · LXL04_034456 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05057.22DUF67695-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034456	`PF05057.22`	DUF676	95	339	3.1e-65	220.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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