LXL04_034258 | RubberDandelionOmics

Gene overview

LXL04_034258

Reference: OH-1004 Chr: Chr07 Coordinates: 93599345-93601559 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · LXL04_034258|LXL04_034258|OH1004|cDNA

ATGCTTGGTGGATTATACGGAGACTTACCTCCTCCATCATCCACCGATGAGGATTCGCACAACAGAGTCACCAATCCCTCCTCCAATGTTTGGTCAAGCAGCGTCAAAATGGCACCACCAACTCTCCGCAaaccatcttcttcttcactcaTCCCGCCCCCCAAAACCCTTCTGAAACCCCAACAAACCAAACCCAGAATCGTTAATCCACCCGCAGTTACCCCAGTGCCAGATGTGATCACCAGAAGCTCATCGTTCCA...

CDS

Download CDS FASTA

1146 bp · LXL04_034258|LXL04_034258|OH1004|CDS

ATGCTTGGTGGATTATACGGAGACTTACCTCCTCCATCATCCACCGATGAGGATTCGCACAACAGAGTCACCAATCCCTCCTCCAATGTTTGGTCAAGCAGCGTCAAAATGGCACCACCAACTCTCCGCAAACCATCTTCTTCTTCACTCATCCCGCCCCCCAAAACCCTTCTGAAACCCCAACAAACCAAACCCAGAATCGTTAATCCACCCGCAGTTACCCCAGTGCCAGATGTGATCACCAGAAGCTCATCGTTCCA...

Protein

Download Protein FASTA

381 aa · LXL04_034258|LXL04_034258|OH1004|PROTEIN

MLGGLYGDLPPPSSTDEDSHNRVTNPSSNVWSSSVKMAPPTLRKPSSSSLIPPPKTLLKPQQTKPRIVNPPAVTPVPDVITRSSSFQPALVGVTSSVEEEYDPARPNDYEEYKRERKRKAAEAEMKRELDRRRQEEEEREKREKENMEKEREKDYNISGEEAWKRRAAMSGGGGGGVPRRSPSPPSGGADGFSIEKSETGGLGVGAGGQMTAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNASEPKQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034258`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034258

Location Chr07:93599345-93601559 (+)

Description Similar to DRT111: DNA-damage-repair/toleration protein DRT111, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30480`	May regulate pre-mRNA alternative splicing during photomorphogenesis.	Splicing of receptor-like kinase-encoding SNC4 and CERK1 is regulated by two conserved splicing factors that are required for plant immunity.2014 · DOI: 10.1093/mp/ssu103 SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in Arabidopsis .2017 · DOI: 10.1073/pnas.1706379114 DRT111/SFPS Splicing Factor Controls Abscisic Acid Sensitivity during Seed Development and Germination.2020 · DOI: 10.1104/pp.20.00037 SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis .2022 · DOI: 10.1073/pnas.2214565119 Two cDNAs from the plant Arabidopsis thaliana that partially restore recombination proficiency and DNA-damage resistance to E. coli mutants lacking recombination-intermediate-resolution activities.1993 · DOI: 10.1093/nar/21.7.1647

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034258 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000375 RNA splicing, via transesterification reactions Biological Process

GO:0000380 alternative mRNA splicing, via spliceosome Biological Process

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006281 DNA repair Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006376 mRNA splice site recognition Biological Process

GO:0006396 RNA processing Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009637 response to blue light Biological Process

GO:0009651 response to salt stress Biological Process

KEGG gene cross-reference

ath:AT1G30480

bta:512824

dre:415211

hsa:84991

mmu:76938

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.921

Rank 1 · LXL04_034258 · OH-1004

Cytoplasm0.216

Rank 2 · LXL04_034258 · OH-1004

Mitochondrion0.021

Rank 3 · LXL04_034258 · OH-1004

Cell membrane0.021

Rank 4 · LXL04_034258 · OH-1004

Endoplasmic reticulum0.011

Rank 5 · LXL04_034258 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01585.29G-patch211-251 aa

PF29326.1RRM_MUD2_C275-368 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034258	`PF01585.29`	G-patch	211	251	1.6e-17	63.8
LXL04_034258	`PF29326.1`	RRM_MUD2_C	275	368	1.2e-07	32.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42698`	Arabidopsis thaliana	DNA-damage-repair/toleration protein 111	69.000%	Swiss-Prot	strong database homology

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