Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1179 bp · LXL04_034051|LXL04_034051|OH1004|cDNA
ATCGGGAATAGGTGGAGTACGTATCTAATAACTCCGTTAGTCCGCCTCTCACTTAACGGCTCCCCTTGCCACAATTCCGAGGAATTTCAATTTTCAGAAATGTCAGCGACGGCGATTCAAAATTTGGGATCAACTATCCCCGTCCCAAGCGTCAAAGAACTCGTTGCACACACTCTCGACGCTGTGCCGCAGCGCTATCTATGGGACGTCGACGGTGACTATCCTACCGCTCCCGCTTTCTCCGGCAACTCTTCACTTCA...
1080 bp · LXL04_034051|LXL04_034051|OH1004|CDS
ATGTCAGCGACGGCGATTCAAAATTTGGGATCAACTATCCCCGTCCCAAGCGTCAAAGAACTCGTTGCACACACTCTCGACGCTGTGCCGCAGCGCTATCTATGGGACGTCGACGGTGACTATCCTACCGCTCCCGCTTTCTCCGGCAACTCTTCACTTCAGGTGCCGGTCCTGGACATGGCCAAGCTCGTTGATCCTCGGTATCAAGAGTTAGAGCTTCAAAAGCTTCACGATGCGTGCAAAAATTGGGGCATCTTTCA...
Protein
Download Protein FASTA359 aa · LXL04_034051|LXL04_034051|OH1004|PROTEIN
MSATAIQNLGSTIPVPSVKELVAHTLDAVPQRYLWDVDGDYPTAPAFSGNSSLQVPVLDMAKLVDPRYQELELQKLHDACKNWGIFQLTGHEIYDESIKNMHTKTQKFFNLPHEEKQRYAQKPGSLEGYGQAFVISEDQKLEWCDMIFLKTIPTETRKLEFWPHNFTKTLDTYSQHMRKVAVSIIGLIAMALGTNEKMLSEAFEGGQYDVRMNCYPPCPQPEQVIGISSHADISAISLLTDCGDIPGLQVLKDGQWVYIE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034051 |
|---|---|
| TK1151 ID | TkA08G339610 |
| OH-1004 ID | LXL04_034051 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.800 |
| Protein coverage (%) | TK1151 91.582 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034051 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:78178522-78180523 (+) | |||||||||
| Description | Similar to SRG1: Protein SRG1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002238 response to molecule of fungal origin Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0010150 leaf senescence Biological Process GO:0032259 methylation Biological Process GO:0097295 morphine biosynthetic process Biological Process GO:1901601 strigolactone biosynthetic process Biological Process GO:2000032 regulation of secondary shoot formation Biological Process GO:0005737 cytoplasm Cellular Component GO:0008168 methyltransferase activity Molecular Function GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Molecular Function GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function GO:0030782 (S)-tetrahydroprotoberberine N-methyltransferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ag:ADD85331 ath:AT1G17020 ath:AT3G21420 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N55-165 aaPF03171.272OG-FeII_Oxy210-305 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034051 | PF14226.13 | DIOX_N | 55 | 165 | 8.6e-29 | 101.3 |
| LXL04_034051 | PF03171.27 | 2OG-FeII_Oxy | 210 | 305 | 4.2e-27 | 95.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.