LXL04_033943 | RubberDandelionOmics

Gene overview

LXL04_033943

Reference: OH-1004 Chr: Chr07 Coordinates: 67497490-67498452 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

759 bp · LXL04_033943|LXL04_033943|OH1004|cDNA

ATGGTTTCTCTTCTCAAAACCACTCTTACAATCACGTTCTACTTCACACTCCTTTCTTCCCTTTCACGCCCAACTCATGGAGTGTTCTTCGAGGAACTCTCAGAAGCCATATCCATGAAACGAATGGAAAAAACGACCCgcctccatttcttcttccacGACATCCACAGTGGTAAAACCCCGTCAGCAATTAAGATCGCTGGAACCTCAGATCCGAGCTTTTTTGGCGACACATATATGATGGATAACGCGTTGACAGA...

CDS

Download CDS FASTA

759 bp · LXL04_033943|LXL04_033943|OH1004|CDS

ATGGTTTCTCTTCTCAAAACCACTCTTACAATCACGTTCTACTTCACACTCCTTTCTTCCCTTTCACGCCCAACTCATGGAGTGTTCTTCGAGGAACTCTCAGAAGCCATATCCATGAAACGAATGGAAAAAACGACCCGCCTCCATTTCTTCTTCCACGACATCCACAGTGGTAAAACCCCGTCAGCAATTAAGATCGCTGGAACCTCAGATCCGAGCTTTTTTGGCGACACATATATGATGGATAACGCGTTGACAGA...

Protein

Download Protein FASTA

252 aa · LXL04_033943|LXL04_033943|OH1004|PROTEIN

MVSLLKTTLTITFYFTLLSSLSRPTHGVFFEELSEAISMKRMEKTTRLHFFFHDIHSGKTPSAIKIAGTSDPSFFGDTYMMDNALTEGQENSSKVVGKAQGMYAFAAQKEPALLMVLNYEFTQGDFNGSSISVLGRNPVMVDVREMPIVGGSGRFRYATGYALAHTVSFDPKTGDAIVEYNRTWFLKEKSELYDVNTGFYVEEGNITCTDLPNNRSIGSTTNPKFRTIRRKLTHSDRSLITAANSILAFSWC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033943`
TK1151 ID	TkA05G091570
OH-1004 ID	LXL04_033943
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	91.400
Protein coverage (%)	TK1151 95.522 / OH-1004 55.556 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033943

Location Chr07:67497490-67498452 (+)

Description Similar to DIR3: Dirigent protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49040`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At2g21100`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At3g13650`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release
`At1g65870`	Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033943 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0140859 pterocarpan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G65870

ath:AT2G21100

ath:AT3G13650

ath:AT5G49040

gmx:100500621

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.257

Rank 1 · LXL04_033943 · OH-1004

Endoplasmic reticulum0.235

Rank 2 · LXL04_033943 · OH-1004

Lysosome / Vacuole0.199

Rank 3 · LXL04_033943 · OH-1004

Cell membrane0.151

Rank 4 · LXL04_033943 · OH-1004

Cytoplasm0.110

Rank 5 · LXL04_033943 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03018.20Dirigent46-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033943	`PF03018.20`	Dirigent	46	181	5.3e-52	176.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FI66`	Arabidopsis thaliana	Dirigent protein 3	53.691%	Swiss-Prot	moderate database homology
`Q84TH6`	Arabidopsis thaliana	Dirigent protein 23	50.345%	Swiss-Prot	moderate database homology
`Q9LID5`	Arabidopsis thaliana	Dirigent protein 7	43.169%	Swiss-Prot	moderate database homology
`Q9SS03`	Arabidopsis thaliana	Dirigent protein 21	48.966%	Swiss-Prot	moderate database homology

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