LXL04_033847 | RubberDandelionOmics

Gene overview

LXL04_033847

Reference: OH-1004 Chr: Chr07 Coordinates: 60673741-60674430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

423 bp · LXL04_033847|LXL04_033847|OH1004|cDNA

ATGCCATATGGACCTTATTGGGATCACGTGAAAGAGTATTATAAAGGTAGTTCTGAATATCCAGAAAGGGTTCTATTTCTAACATACGAGGACATGAAAATAGATAATGCAAATAAAGTTAAGCACTTGGCAGCGTTCTTGGGTTGCCCTTTCACAGAGGAGGAAGAGGCTACTGGTGTAGTGGAAGAGATTGTGTGGCTATGTAGTTTTGAGAATTTGAAAGCAGTTAATAAGCATGGGGATTTACGTGTGGGTGTTCC...

CDS

Download CDS FASTA

423 bp · LXL04_033847|LXL04_033847|OH1004|CDS

ATGCCATATGGACCTTATTGGGATCACGTGAAAGAGTATTATAAAGGTAGTTCTGAATATCCAGAAAGGGTTCTATTTCTAACATACGAGGACATGAAAATAGATAATGCAAATAAAGTTAAGCACTTGGCAGCGTTCTTGGGTTGCCCTTTCACAGAGGAGGAAGAGGCTACTGGTGTAGTGGAAGAGATTGTGTGGCTATGTAGTTTTGAGAATTTGAAAGCAGTTAATAAGCATGGGGATTTACGTGTGGGTGTTCC...

Protein

Download Protein FASTA

140 aa · LXL04_033847|LXL04_033847|OH1004|PROTEIN

MPYGPYWDHVKEYYKGSSEYPERVLFLTYEDMKIDNANKVKHLAAFLGCPFTEEEEATGVVEEIVWLCSFENLKAVNKHGDLRVGVPNDTFFQEGKVGGWRNHLTNEMSQILDDITTKKFQVSNLFDRLDGIPTNKPSTY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033847`
TK1151 ID	TkA08G314790
OH-1004 ID	LXL04_033847
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 54.762 / OH-1004 65.714 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033847

Location Chr07:60673741-60674430 (-)

Description Similar to SOT5: Cytosolic sulfotransferase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45070`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of flavones and flavonols.	Biochemical and molecular characterization of flavonoid 7-sulfotransferase from Arabidopsis thaliana.2006 · DOI: 10.1016/j.plaphy.2006.10.004
`At3g45080`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release
`At5g43690`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033847 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009806 lignan metabolic process Biological Process

GO:0009812 flavonoid metabolic process Biological Process

GO:0051923 sulfation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008146 sulfotransferase activity Molecular Function

GO:0047366 quercetin-3-sulfate 4'-sulfotransferase activity Molecular Function

GO:0047894 flavonol 3-sulfotransferase activity Molecular Function

GO:1990135 flavonoid sulfotransferase activity Molecular Function

KEGG gene cross-reference

ag:AAA33342

ag:AAA33343

ath:AT3G45070

ath:AT3G45080

ath:AT5G43690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.789

Rank 1 · LXL04_033847 · OH-1004

Nucleus0.168

Rank 2 · LXL04_033847 · OH-1004

Endoplasmic reticulum0.075

Rank 3 · LXL04_033847 · OH-1004

Peroxisome0.065

Rank 4 · LXL04_033847 · OH-1004

Mitochondrion0.037

Rank 5 · LXL04_033847 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00685.34Sulfotransfer_12-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033847	`PF00685.34`	Sulfotransfer_1	2	121	9e-28	98.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1V2`	Arabidopsis thaliana	Cytosolic sulfotransferase 5	48.800%	Swiss-Prot	moderate database homology
`Q9M1V1`	Arabidopsis thaliana	Cytosolic sulfotransferase 6	49.206%	Swiss-Prot	moderate database homology
`Q9FG94`	Arabidopsis thaliana	Cytosolic sulfotransferase 1	45.600%	Swiss-Prot	moderate database homology

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