LXL04_033790 | RubberDandelionOmics

Gene overview

LXL04_033790

Reference: OH-1004 Chr: Chr07 Coordinates: 57701276-57704769 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1992 bp · LXL04_033790|LXL04_033790|OH1004|cDNA

ATGACAGAAAAAAGTCGAGCTTATAGACCGTGGACCACACATGAAGATGCTAAGCTTGTGGAAGCGCTGCTAAACATGGTAAACACAGGTGGGTATAAAGCCGATAACGGTTTCAAATCCGGTTATTTACAACATTTGGGACAAGCTTTGAAAGAATCACTTCCGGCCTCGGGTCTTTTGCCGAAACCTCATATTGAGTCACGAATTAGGACTATGAAGAAGGAGTGGCAAATTGTTTACGACATGATCACCGGTAATAA...

CDS

Download CDS FASTA

1992 bp · LXL04_033790|LXL04_033790|OH1004|CDS

ATGACAGAAAAAAGTCGAGCTTATAGACCGTGGACCACACATGAAGATGCTAAGCTTGTGGAAGCGCTGCTAAACATGGTAAACACAGGTGGGTATAAAGCCGATAACGGTTTCAAATCCGGTTATTTACAACATTTGGGACAAGCTTTGAAAGAATCACTTCCGGCCTCGGGTCTTTTGCCGAAACCTCATATTGAGTCACGAATTAGGACTATGAAGAAGGAGTGGCAAATTGTTTACGACATGATCACCGGTAATAA...

Protein

Download Protein FASTA

663 aa · LXL04_033790|LXL04_033790|OH1004|PROTEIN

MTEKSRAYRPWTTHEDAKLVEALLNMVNTGGYKADNGFKSGYLQHLGQALKESLPASGLLPKPHIESRIRTMKKEWQIVYDMITGNNTSGFGYDSVNRCGTVESPEVWDAYVKVHKGAEKWRNKQIPHYDDLCIIFGKDRAQGNRAEDCEDMSHNANVDEELLDMEDDFNEQNEETSPTTNVQSEETSSASSKKRKRKDPFIEGISNALQKKTSMVTAEILKIPSMNQSDKFKASRKIMREPEAVLTFWNLEGEDRETFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033790`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033790

Location Chr07:57701276-57704769 (+)

Description Similar to At5g59700: Probable receptor-like protein kinase At5g59700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033790 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0045087 innate immune response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004714 transmembrane receptor protein tyrosine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G46290

ath:AT5G59700

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.583

Rank 1 · LXL04_033790 · OH-1004

Nucleus0.530

Rank 2 · LXL04_033790 · OH-1004

Cell membrane0.061

Rank 3 · LXL04_033790 · OH-1004

Mitochondrion0.046

Rank 4 · LXL04_033790 · OH-1004

Endoplasmic reticulum0.045

Rank 5 · LXL04_033790 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12776.14Myb_DNA-bind_311-111 aa

PF00069.32Pkinase339-388 aa

PF07714.24PK_Tyr_Ser-Thr340-402 aa

PF00069.32Pkinase432-629 aa

PF07714.24PK_Tyr_Ser-Thr433-656 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033790	`PF12776.14`	Myb_DNA-bind_3	11	111	1.1e-07	33.4
LXL04_033790	`PF00069.32`	Pkinase	339	388	9e-45	153.8
LXL04_033790	`PF07714.24`	PK_Tyr_Ser-Thr	340	402	5.4e-48	164.3
LXL04_033790	`PF00069.32`	Pkinase	432	629	9e-45	153.8
LXL04_033790	`PF07714.24`	PK_Tyr_Ser-Thr	433	656	5.4e-48	164.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	52.198%	Swiss-Prot	weak database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	52.841%	Swiss-Prot	weak database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	37.548%	Swiss-Prot	weak database homology
`Q9FID9`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g38990	37.692%	Swiss-Prot	weak database homology
`Q65XV8`	Oryza sativa subsp. japonica	Receptor-like cytoplasmic kinase 176	36.078%	Swiss-Prot	weak database homology

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