LXL04_033533 | RubberDandelionOmics

Gene overview

LXL04_033533

Reference: OH-1004 Chr: Chr07 Coordinates: 46923809-46926617 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1368 bp · LXL04_033533|LXL04_033533|OH1004|cDNA

ATGACGGGAAGAATTGCATCCAGATTCATAAAAGAATGCTTGACACAGAAGCTAAAATCAATGGCGGCTCCCAGGCATTATTGCTCATCTGCAACTGCTACTGCTAAACCAAATGTTCCTCATTCTTCAAGAAAGGGAAGATTACTTACAGGAGCTACAATCGGCCTGGTTATAGCAGGAGGAGCTTACGCCAGCACTGTTGATGAAGCAACATTCGGTGGATGGCTATTCTCAGCAACAAAACTCGTAAATCCATTCTT...

CDS

Download CDS FASTA

1368 bp · LXL04_033533|LXL04_033533|OH1004|CDS

ATGACGGGAAGAATTGCATCCAGATTCATAAAAGAATGCTTGACACAGAAGCTAAAATCAATGGCGGCTCCCAGGCATTATTGCTCATCTGCAACTGCTACTGCTAAACCAAATGTTCCTCATTCTTCAAGAAAGGGAAGATTACTTACAGGAGCTACAATCGGCCTGGTTATAGCAGGAGGAGCTTACGCCAGCACTGTTGATGAAGCAACATTCGGTGGATGGCTATTCTCAGCAACAAAACTCGTAAATCCATTCTT...

Protein

Download Protein FASTA

455 aa · LXL04_033533|LXL04_033533|OH1004|PROTEIN

MTGRIASRFIKECLTQKLKSMAAPRHYCSSATATAKPNVPHSSRKGRLLTGATIGLVIAGGAYASTVDEATFGGWLFSATKLVNPFFALLDPETAHRLAISAAARGWVPREKRPDQQILGLEVWGRRFSNPIGLAAGFDKNAEAVEGLLGLGFGFVEVGSVTPIPQEGNPKPRMFRLREQGALINRCGFNSEGIVAVAKRLGAQHGKRKLDETSSTSTSSNDEVKHGGKAGPGILGVNIGKNKTSEDAAADYVQGVHTLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033533`
TK1151 ID	TkA08G271230
OH-1004 ID	LXL04_033533
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033533

Location Chr07:46923809-46926617 (+)

Description Similar to PYRD: Dihydroorotate dehydrogenase (quinone), mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23300`	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0676300`	Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033533 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process Biological Process

GO:0006225 UDP biosynthetic process Biological Process

GO:0009220 pyrimidine ribonucleotide biosynthetic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0031000 response to caffeine Biological Process

GO:0042594 response to starvation Biological Process

GO:0044205 'de novo' UMP biosynthetic process Biological Process

GO:0090140 regulation of mitochondrial fission Biological Process

GO:1903576 response to L-arginine Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT5G23300

azc:AZC_4640

dosa:Os04g0676300

mmu:56749

rno:65156

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.955

Rank 1 · LXL04_033533 · OH-1004

Cytoplasm0.055

Rank 2 · LXL04_033533 · OH-1004

Nucleus0.045

Rank 3 · LXL04_033533 · OH-1004

Cell membrane0.024

Rank 4 · LXL04_033533 · OH-1004

Plastid0.015

Rank 5 · LXL04_033533 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01180.28DHO_dh120-438 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033533	`PF01180.28`	DHO_dh	120	438	9.9e-89	298.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P32746`	Arabidopsis thaliana	Dihydroorotate dehydrogenase (quinone), mitochondrial	77.174%	Swiss-Prot	strong database homology
`Q7XKC8`	Oryza sativa subsp. japonica	Dihydroorotate dehydrogenase (quinone), mitochondrial	81.463%	Swiss-Prot	strong database homology

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