LXL04_033479 | RubberDandelionOmics

Gene overview

LXL04_033479

Reference: OH-1004 Chr: Chr07 Coordinates: 45028544-45034471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2814 bp · LXL04_033479|LXL04_033479|OH1004|cDNA

ATGGCGGCAGGAGGCGGCGGAGGGAGGGCAATCAGGGTGCTGAATGTGGCGGAGAAGCCGTCGGTGGCAAAGACGGTATCGGGAATATTATCGAGTAACCAGGGGTTGAGAACGCGAGAGGGGCGGTCAAGGTACAACAAAGTGTTCGAGTTCAATTACACGATTCAAGGGCAGCCTTGCCAGATGCTCTTCACGTCCGTGACTGGACATCTCATGGAAATAGAGTTTGAAAGCCGCTATCGGAAGTGGAGCTCTTGCGA...

CDS

Download CDS FASTA

2814 bp · LXL04_033479|LXL04_033479|OH1004|CDS

ATGGCGGCAGGAGGCGGCGGAGGGAGGGCAATCAGGGTGCTGAATGTGGCGGAGAAGCCGTCGGTGGCAAAGACGGTATCGGGAATATTATCGAGTAACCAGGGGTTGAGAACGCGAGAGGGGCGGTCAAGGTACAACAAAGTGTTCGAGTTCAATTACACGATTCAAGGGCAGCCTTGCCAGATGCTCTTCACGTCCGTGACTGGACATCTCATGGAAATAGAGTTTGAAAGCCGCTATCGGAAGTGGAGCTCTTGCGA...

Protein

Download Protein FASTA

937 aa · LXL04_033479|LXL04_033479|OH1004|PROTEIN

MAAGGGGGRAIRVLNVAEKPSVAKTVSGILSSNQGLRTREGRSRYNKVFEFNYTIQGQPCQMLFTSVTGHLMEIEFESRYRKWSSCDPVDLFQAPIRKHVPEDKLDIKKTLEEEARKCQWLVLWLDCDREGENIAFEVVEVCSNANSHLNIWRARFSSLIEREIHQAAQQLQRPNQLFSDAVDVRQEIDLRIGASFTRFQTMLLKDAFVFNFSTDGRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWKIQCTHTADE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033479`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033479

Location Chr07:45028544-45034471 (+)

Description Similar to TOP3A: DNA topoisomerase 3-alpha

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63920`	Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0165000`	Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033479 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0000712 resolution of meiotic recombination intermediates Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006265 DNA topological change Biological Process

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0032042 mitochondrial DNA metabolic process Biological Process

GO:0051304 chromosome separation Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0071139 resolution of DNA recombination intermediates Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT5G63920

ddi:DDB_G0275257

dosa:Os03g0165000

hsa:7156

mmu:21975

osa:9269718

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.689

Rank 1 · LXL04_033479 · OH-1004

Cytoplasm0.374

Rank 2 · LXL04_033479 · OH-1004

Mitochondrion0.075

Rank 3 · LXL04_033479 · OH-1004

Cell membrane0.039

Rank 4 · LXL04_033479 · OH-1004

Endoplasmic reticulum0.033

Rank 5 · LXL04_033479 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01751.29Toprim14-158 aa

PF01131.26Topoisom_bac175-593 aa

PF06839.18Zn_ribbon_GRF825-865 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033479	`PF01751.29`	Toprim	14	158	2e-12	47.8
LXL04_033479	`PF01131.26`	Topoisom_bac	175	593	1.2e-108	364.5
LXL04_033479	`PF06839.18`	Zn_ribbon_GRF	825	865	1.6e-08	35.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVP1`	Arabidopsis thaliana	DNA topoisomerase 3-alpha	64.706%	Swiss-Prot	strong database homology
`C7J0A2`	Oryza sativa subsp. japonica	DNA topoisomerase 3-alpha	63.087%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card