Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1071 bp · LXL04_033451|LXL04_033451|OH1004|cDNA
ATGAAAAGGGAGAGAAACGGAGGAATATGGGATTTTGAGCATGGTATAGTTCCGGCGACCGGTGGTCAGGATCTGATTCTGGGATTGGACGGCGGGACGACTTCCACGGTATGTATATCCATGCCTATCTTCCCTTTCACCAACGGCAGCCTTCCTCCCGACCCTCCTCCCGTCATAGCTCGTGCAGTCGCTGGCTGCTCAAATCATAATAGTGTCGGCGAAACCGCCGCAAGGGAGACGCTAGAACAAGTTATGGCGGA...
1071 bp · LXL04_033451|LXL04_033451|OH1004|CDS
ATGAAAAGGGAGAGAAACGGAGGAATATGGGATTTTGAGCATGGTATAGTTCCGGCGACCGGTGGTCAGGATCTGATTCTGGGATTGGACGGCGGGACGACTTCCACGGTATGTATATCCATGCCTATCTTCCCTTTCACCAACGGCAGCCTTCCTCCCGACCCTCCTCCCGTCATAGCTCGTGCAGTCGCTGGCTGCTCAAATCATAATAGTGTCGGCGAAACCGCCGCAAGGGAGACGCTAGAACAAGTTATGGCGGA...
Protein
Download Protein FASTA356 aa · LXL04_033451|LXL04_033451|OH1004|PROTEIN
MKRERNGGIWDFEHGIVPATGGQDLILGLDGGTTSTVCISMPIFPFTNGSLPPDPPPVIARAVAGCSNHNSVGETAARETLEQVMADALSQSSSTRSSVRAVCLAVSGVNHPTDQQRILNWLRAIFPKDVKCFVHNDAVAAMASGTMGKLHGCVLIAGTGTITYGYTEDGREARAAGAGPVLGDWGSGYGIAAMALTAVIRAYDGRGPQTMLTSNILKELQLSSPDELIGWTYADPSWARIAALVPVVVLCAESGDEVAN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033451 |
|---|---|
| TK1151 ID | TkA08G257540 |
| OH-1004 ID | LXL04_033451 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033451 |
|---|---|
| Location | Chr07:44116388-44118110 (+) |
| Description | Similar to nagk: N-acetyl-D-glucosamine kinase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006044 N-acetylglucosamine metabolic process Biological Process GO:0006046 N-acetylglucosamine catabolic process Biological Process GO:0006048 UDP-N-acetylglucosamine biosynthetic process Biological Process GO:0006051 N-acetylmannosamine metabolic process Biological Process GO:0009254 peptidoglycan turnover Biological Process GO:0019262 N-acetylneuraminate catabolic process Biological Process GO:0032495 response to muramyl dipeptide Biological Process GO:0042742 defense response to bacterium Biological Process GO:0045087 innate immune response Biological Process GO:0046835 carbohydrate phosphorylation Biological Process GO:0070434 positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway Biological Process GO:0097172 N-acetylmuramic acid metabolic process Biological Process |
| KEGG gene cross-reference | bta:508132 cac:CA_C0183 ddi:DDB_G0284433 hsa:55577 rno:297393 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01869.27BcrAD_BadFG27-341 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033451 | PF01869.27 | BcrAD_BadFG | 27 | 341 | 1.6e-57 | 195.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.