LXL04_033414 | RubberDandelionOmics

Gene overview

LXL04_033414

Reference: OH-1004 Chr: Chr07 Coordinates: 43278106-43279966 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1683 bp · LXL04_033414|LXL04_033414|OH1004|cDNA

ATGGAGAAACAGATTAGTTTTCGGATGGGAAAGATGGAAAACCAGCAGAGTTTTCGTGTTTCTGCTATGGAGAAGCAGAAGAGCTTTCGAATCGCCATGGGAAGACAGATGAGCTTCGGTGTTGATAGAAGGAAACCTAAAGATTCACCAGGAAAACGTGGGGATTCCATGCTTCATCTAGCTTCTAGAGGCGGTAATCTAGCAAAAGTCATAGAAATCTTTCAAAGCGTCGGCCTCGATGGATTATCGAAACAAAATCA...

CDS

Download CDS FASTA

1683 bp · LXL04_033414|LXL04_033414|OH1004|CDS

ATGGAGAAACAGATTAGTTTTCGGATGGGAAAGATGGAAAACCAGCAGAGTTTTCGTGTTTCTGCTATGGAGAAGCAGAAGAGCTTTCGAATCGCCATGGGAAGACAGATGAGCTTCGGTGTTGATAGAAGGAAACCTAAAGATTCACCAGGAAAACGTGGGGATTCCATGCTTCATCTAGCTTCTAGAGGCGGTAATCTAGCAAAAGTCATAGAAATCTTTCAAAGCGTCGGCCTCGATGGATTATCGAAACAAAATCA...

Protein

Download Protein FASTA

560 aa · LXL04_033414|LXL04_033414|OH1004|PROTEIN

MEKQISFRMGKMENQQSFRVSAMEKQKSFRIAMGRQMSFGVDRRKPKDSPGKRGDSMLHLASRGGNLAKVIEIFQSVGLDGLSKQNQEGETPLYVAAENGHSHVVAQFLKHLDLQTASIAANNGYDPFHIAAKQGHLEVLKELLNSFPNLVMTTDSANSTALHTAAAQGHTDVVNLLLDADSNLAKIARNNGKTVLHTAARMGHLEVAKSVLTKDPSIGFRIDKKGQTALHMAVKGQNMDMVVELIKPDPTVLSLEDNKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033414`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033414

Location Chr07:43278106-43279966 (+)

Description Similar to At5g02620: Ankyrin repeat-containing protein At5g02620

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02620`	Ankyrin repeat-containing protein At5g02620.	No verified direct reference in this release
`At3g12360`	Involved in salt stress tolerance.	ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
`At2g01680`	Ankyrin repeat-containing protein At2g01680.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0837000`	Involved in salt stress tolerance.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033414 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G01680

ath:AT3G12360

ath:AT5G02620

dosa:Os01g0837000

mmu:271144

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.846

Rank 1 · LXL04_033414 · OH-1004

Cytoplasm0.091

Rank 2 · LXL04_033414 · OH-1004

Endoplasmic reticulum0.063

Rank 3 · LXL04_033414 · OH-1004

Nucleus0.061

Rank 4 · LXL04_033414 · OH-1004

Lysosome / Vacuole0.027

Rank 5 · LXL04_033414 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796.14Ank_253-110 aa

PF12796.14Ank_258-146 aa

PF24521.3Ank_KRIT190-199 aa

PF00023.37Ank123-145 aa

PF13637.13Ank_4129-178 aa

PF13857.13Ank_5144-181 aa

PF12796.14Ank_2156-215 aa

PF00023.37Ank159-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033414	`PF12796.14`	Ank_2	53	110	1.5e-41	141.6
LXL04_033414	`PF12796.14`	Ank_2	58	146	1.5e-41	141.6
LXL04_033414	`PF24521.3`	Ank_KRIT1	90	199	1.6e-12	48.1
LXL04_033414	`PF00023.37`	Ank	123	145	3.1e-39	131.5
LXL04_033414	`PF13637.13`	Ank_4	129	178	2.9e-32	110.7
LXL04_033414	`PF13857.13`	Ank_5	144	181	2.9e-32	111.1
LXL04_033414	`PF12796.14`	Ank_2	156	215	1.5e-41	141.6
LXL04_033414	`PF00023.37`	Ank	159	183	3.1e-39	131.5
LXL04_033414	`PF13637.13`	Ank_4	162	209	2.9e-32	110.7
LXL04_033414	`PF12796.14`	Ank_2	230	316	1.5e-41	141.6
LXL04_033414	`PF13857.13`	Ank_5	256	301	2.9e-32	111.1
LXL04_033414	`PF00023.37`	Ank	260	292	3.1e-39	131.5
LXL04_033414	`PF13637.13`	Ank_4	264	301	2.9e-32	110.7
LXL04_033414	`PF13962.12`	PGG	373	485	1.3e-26	93.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6AWW5`	Arabidopsis thaliana	Ankyrin repeat-containing protein At5g02620	48.204%	Swiss-Prot	moderate database homology
`Q9C7A2`	Arabidopsis thaliana	Ankyrin repeat-containing protein ITN1	42.357%	Swiss-Prot	moderate database homology
`Q9ZU96`	Arabidopsis thaliana	Ankyrin repeat-containing protein At2g01680	44.737%	Swiss-Prot	moderate database homology
`A2CIR5`	Oryza sativa subsp. japonica	Ankyrin repeat-containing protein NPR4	41.373%	Swiss-Prot	moderate database homology

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