LXL04_033404 | RubberDandelionOmics

Gene overview

LXL04_033404

Reference: OH-1004 Chr: Chr07 Coordinates: 43061565-43069170 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2007 bp · LXL04_033404|LXL04_033404|OH1004|cDNA

atgacgaaatcttcaagcagaagatttgtttttaatacttttgtatacatattttagcaaacgtttaaattcagacattataaacttttgtaacaggcttttaattaatgaatttgagatgtttgctatgtttgcttgattgttgtggttgtgatgctaaatatgacgttccgccctcaaacgtttccgccatactggtttgggggtgtgacagttgTGGATTCTGGGAATTCAAATTTCAAGAAAGGCGATCTAGTTTG...

CDS

Download CDS FASTA

1872 bp · LXL04_033404|LXL04_033404|OH1004|CDS

TTGATTGTTGTGGTTGTGATGCTAAATATGACGTTCCGCCCTCAAACGTTTCCGCCATACTGGTTTGGGGGTGTGACAGTTGTGGATTCTGGGAATTCAAATTTCAAGAAAGGCGATCTAGTTTGGGGAGGGACAGGATGGGAAGAATACAGCATTATCAATGATCCCCAGTTTCTATTCAAAATTCAAGATACAGATGTCCCTCTTTCCTATTATACAGGAATTCTTGGTATGCCTGGTATGACGGCTTATTATGGTTT...

Protein

Download Protein FASTA

623 aa · LXL04_033404|LXL04_033404|OH1004|PROTEIN

MIVVVVMLNMTFRPQTFPPYWFGGVTVVDSGNSNFKKGDLVWGGTGWEEYSIINDPQFLFKIQDTDVPLSYYTGILGMPGMTAYYGLYKICAPKKGEYVFVSAASGAVGQLVGQFAKLTGCYVVGSAGTKEKVDLLKNKFGFDEAFNYKEEQDLDAALKKYFPEGIDIYFENVGGKMLEDVLLNMRENGRISVCGLISQYNLVEEEGVKNLFCVVTKRLLLKGFIISDHFNLYPKYLEMVMPLIKEGNICYIEDIVEGLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033404`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033404

Location Chr07:43061565-43069170 (-)

Description Similar to DBR: 2-alkenal reductase (NADP(+)-dependent)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16990`	Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro).	No verified direct reference in this release
`At5g16970`	Involved in the detoxification of reactive carbonyls.	Protection against photooxidative injury of tobacco leaves by 2-alkenal reductase. Detoxication of lipid peroxide-derived reactive carbonyls.2005 · DOI: 10.1104/pp.105.070391 Mechanistic and structural studies of apoform, binary, and ternary complexes of the Arabidopsis alkenal double bond reductase At5g16970.2006 · DOI: 10.1074/jbc.m605900200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033404 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0032440 2-alkenal reductase [NAD(P)H] activity Molecular Function

GO:0035798 2-alkenal reductase (NADPH) activity Molecular Function

KEGG gene cross-reference

ag:BAA89423

ath:AT5G16970

ath:AT5G16990

nta:107830910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.732

Rank 1 · LXL04_033404 · OH-1004

Nucleus0.169

Rank 2 · LXL04_033404 · OH-1004

Endoplasmic reticulum0.093

Rank 3 · LXL04_033404 · OH-1004

Mitochondrion0.090

Rank 4 · LXL04_033404 · OH-1004

Cell membrane0.067

Rank 5 · LXL04_033404 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16884.11ADH_N_226-57 aa

PF00107.33ADH_zinc_N107-239 aa

PF13602.13ADH_zinc_N_2141-280 aa

PF16884.11ADH_N_2290-400 aa

PF00107.33ADH_zinc_N445-577 aa

PF13602.13ADH_zinc_N_2479-618 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033404	`PF16884.11`	ADH_N_2	26	57	3.1e-35	121.0
LXL04_033404	`PF00107.33`	ADH_zinc_N	107	239	1.1e-48	165.2
LXL04_033404	`PF13602.13`	ADH_zinc_N_2	141	280	1.8e-14	55.5
LXL04_033404	`PF16884.11`	ADH_N_2	290	400	3.1e-35	121.0
LXL04_033404	`PF00107.33`	ADH_zinc_N	445	577	1.1e-48	165.2
LXL04_033404	`PF13602.13`	ADH_zinc_N_2	479	618	1.8e-14	55.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39173`	Arabidopsis thaliana	NADP-dependent alkenal double bond reductase P2	69.412%	Swiss-Prot	moderate database homology
`Q39172`	Arabidopsis thaliana	NADPH-dependent oxidoreductase 2-alkenal reductase	68.915%	Swiss-Prot	moderate database homology

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