LXL04_033401 | RubberDandelionOmics

Gene overview

LXL04_033401

Reference: OH-1004 Chr: Chr07 Coordinates: 42978416-42981004 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2310 bp · LXL04_033401|LXL04_033401|OH1004|cDNA

ATGGCTCCTCAAATCTTCTTTTCCATACTTCTATcactactactactactactactactaccAACTTCCCATTCCTCCTCCCGCCGGATCCTCCATCAACCTTTCTTTCCGGTCGTCGAATCTCCTCCTACACCACCACCGCTTCCACCGCCATTCACTACCCAACCTCCGTCGCCTTCTCCACAACCAGAACCACAACCGCAACCGAAATATCCTTTCTCTTCGCTAACACCGCCTGCACCCCTCGACCACCGTTTCTT...

CDS

Download CDS FASTA

2310 bp · LXL04_033401|LXL04_033401|OH1004|CDS

ATGGCTCCTCAAATCTTCTTTTCCATACTTCTATCACTACTACTACTACTACTACTACTACCAACTTCCCATTCCTCCTCCCGCCGGATCCTCCATCAACCTTTCTTTCCGGTCGTCGAATCTCCTCCTACACCACCACCGCTTCCACCGCCATTCACTACCCAACCTCCGTCGCCTTCTCCACAACCAGAACCACAACCGCAACCGAAATATCCTTTCTCTTCGCTAACACCGCCTGCACCCCTCGACCACCGTTTCTT...

Protein

Download Protein FASTA

769 aa · LXL04_033401|LXL04_033401|OH1004|PROTEIN

MAPQIFFSILLSLLLLLLLLPTSHSSSRRILHQPFFPVVESPPTPPPLPPPFTTQPPSPSPQPEPQPQPKYPFSSLTPPAPLDHRFFPLYNSPSPSSTTTTTTTTTVPSTSLPTFPANISSISLPSSSSSKPRVSTKFLLISVAFSLLSIAFIAAVVVVSVLYHRNRSHKPPPPDSLRLFPANLPTSDKPSPPPTLPPNFSTPSSEFLYLGTLVSPLHDQKFLKTSNHTSNASASASAAATTIDYSNLGSPELHPLPPLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033401`
TK1151 ID	TkA03G456760
OH-1004 ID	LXL04_033401
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	96.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033401

Location Chr07:42978416-42981004 (+)

Description Similar to FH1: Formin-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25500`	Might be involved in the organization and polarity of the actin cytoskeleton.	Overexpression of an Arabidopsis formin stimulates supernumerary actin cable formation from pollen tube cell membrane.2004 · DOI: 10.1105/tpc.016550 The formin homology 1 domain modulates the actin nucleation and bundling activity of Arabidopsis FORMIN1.2005 · DOI: 10.1105/tpc.105.030908
`At2g43800`	Might be involved in the organization and polarity of the actin cytoskeleton.	No verified direct reference in this release
`At5g67470`	Might be involved in the organization and polarity of the actin cytoskeleton.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0517600`	Formin-like protein 15.	No verified direct reference in this release
`Os03g0204100`	Formin-like protein 8.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033401 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0045010 actin nucleation Biological Process

GO:0051016 barbed-end actin filament capping Biological Process

GO:0005634 nucleus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

GO:0003779 actin binding Molecular Function

GO:0051015 actin filament binding Molecular Function

KEGG gene cross-reference

ath:AT2G43800

ath:AT3G25500

dosa:Os03g0204100

dosa:Os09g0517600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.721

Rank 1 · LXL04_033401 · OH-1004

Cytoplasm0.174

Rank 2 · LXL04_033401 · OH-1004

Nucleus0.169

Rank 3 · LXL04_033401 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_033401 · OH-1004

Plastid0.028

Rank 5 · LXL04_033401 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181.29FH2326-711 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033401	`PF02181.29`	FH2	326	711	4.4e-97	326.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SE97`	Arabidopsis thaliana	Formin-like protein 1	58.225%	Swiss-Prot	moderate database homology
`O22824`	Arabidopsis thaliana	Formin-like protein 2	53.691%	Swiss-Prot	moderate database homology
`Q9FJX6`	Arabidopsis thaliana	Formin-like protein 6	55.556%	Swiss-Prot	moderate database homology
`Q69MT2`	Oryza sativa subsp. japonica	Formin-like protein 15	54.018%	Swiss-Prot	moderate database homology
`Q10Q99`	Oryza sativa subsp. japonica	Formin-like protein 8	52.900%	Swiss-Prot	moderate database homology

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