LXL04_033366 | RubberDandelionOmics

Gene overview

LXL04_033366

Reference: OH-1004 Chr: Chr07 Coordinates: 41735878-41738935 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2826 bp · LXL04_033366|LXL04_033366|OH1004|cDNA

ATGTCATCATCTGCGGTACGCCGGGTGAAAGAAAGCGGCGGCGGAGGCGGTGGAGCTAAGGTCACCAGCGTCCCACCTTCAAAAACTTCCAGAAGCACAACTCCATTGTCGGAAAGAATCATCTGTCGCGGTGGAGACTCAGTCAATATGTCCACCGGCAAGGAAAACGCTAACAGTTGCAGACCGACTTCCAGGATTCGTTCTGCAGCGAAGCCCCAGAAGCCGGTCGTTCCGCCTATTGTGCGCGCCGATAAGGACAG...

CDS

Download CDS FASTA

2826 bp · LXL04_033366|LXL04_033366|OH1004|CDS

ATGTCATCATCTGCGGTACGCCGGGTGAAAGAAAGCGGCGGCGGAGGCGGTGGAGCTAAGGTCACCAGCGTCCCACCTTCAAAAACTTCCAGAAGCACAACTCCATTGTCGGAAAGAATCATCTGTCGCGGTGGAGACTCAGTCAATATGTCCACCGGCAAGGAAAACGCTAACAGTTGCAGACCGACTTCCAGGATTCGTTCTGCAGCGAAGCCCCAGAAGCCGGTCGTTCCGCCTATTGTGCGCGCCGATAAGGACAG...

Protein

Download Protein FASTA

941 aa · LXL04_033366|LXL04_033366|OH1004|PROTEIN

MSSSAVRRVKESGGGGGGAKVTSVPPSKTSRSTTPLSERIICRGGDSVNMSTGKENANSCRPTSRIRSAAKPQKPVVPPIVRADKDSVEPRARWSTSSSVRPRGRSQSPSEFNRITTDVRKPRVSRVSLDRNERSVSVDRSARVSDRVSLPNKGSSKYTNSKSTSANGVPTSKVSIASLEKSTDISKESKPKSIVKPPNARVSTLSPKSAKQRDNASHQDIPNTQISSESLVKVSESVKLFEKFKSKSSVGLKSSNPTEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033366`
TK1151 ID	TkA08G253910
OH-1004 ID	LXL04_033366
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033366

Location Chr07:41735878-41738935 (-)

Description Similar to At4g14310: KIN14B-interacting protein At4g14310

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14310`	Might be involved in division plane determination.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033366 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT4G14310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485

Rank 1 · LXL04_033366 · OH-1004

Nucleus0.325

Rank 2 · LXL04_033366 · OH-1004

Cell membrane0.193

Rank 3 · LXL04_033366 · OH-1004

Golgi apparatus0.067

Rank 4 · LXL04_033366 · OH-1004

Endoplasmic reticulum0.061

Rank 5 · LXL04_033366 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25465.2Beta-prop_At4g14310653-936 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033366	`PF25465.2`	Beta-prop_At4g14310	653	936	1.3e-143	478.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JUQ2`	Arabidopsis thaliana	KIN14B-interacting protein At4g14310	46.744%	Swiss-Prot	moderate database homology

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