LXL04_033334 | RubberDandelionOmics

Gene overview

LXL04_033334

Reference: OH-1004 Chr: Chr07 Coordinates: 40993153-40994128 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

681 bp · LXL04_033334|LXL04_033334|OH1004|cDNA

ATGGAAGAGCATTTAGGGTTCTGGAGAAAAGGTCCATGGACTGCCGAAGAAGATCGGTTGCTTATTGACCATGTCAAACTGCATGGCGAAGGACGATGGAACTCTGTGGCCAAACTTACAGGGCTAAAAAGGAACGCAAAAAGTTGTAGGTTAAGGTGGGTGAACTATCTTAGGCCAGACTTAAAGAGAGGCAGAATTACCCCAAACGAGGAAAGGATTATTCTTGATTTGCATGCTCGATGGGGAAATAGGTGGTCAAC...

CDS

Download CDS FASTA

681 bp · LXL04_033334|LXL04_033334|OH1004|CDS

ATGGAAGAGCATTTAGGGTTCTGGAGAAAAGGTCCATGGACTGCCGAAGAAGATCGGTTGCTTATTGACCATGTCAAACTGCATGGCGAAGGACGATGGAACTCTGTGGCCAAACTTACAGGGCTAAAAAGGAACGCAAAAAGTTGTAGGTTAAGGTGGGTGAACTATCTTAGGCCAGACTTAAAGAGAGGCAGAATTACCCCAAACGAGGAAAGGATTATTCTTGATTTGCATGCTCGATGGGGAAATAGGTGGTCAAC...

Protein

Download Protein FASTA

226 aa · LXL04_033334|LXL04_033334|OH1004|PROTEIN

MEEHLGFWRKGPWTAEEDRLLIDHVKLHGEGRWNSVAKLTGLKRNAKSCRLRWVNYLRPDLKRGRITPNEERIILDLHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKRRMSSDDSVKLKARLLKRQKFQQEQLYLQKNEDMKRVLLLLEESDNKVTWRNQDMVNNEIQSVLYPMMFNDSQHVESSMISEDFSLWDGLWNLEDVYPATTKGCVQNLTMPTPIF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033334`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033334

Location Chr07:40993153-40994128 (+)

Description Similar to MYB305: Myb-related protein 305

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59780`	Transcription factor.	No verified direct reference in this release
`At3g27810`	Transcription factor involved in photomorphogenesis in the light.	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling.2006 · DOI: 10.1111/j.1365-313x.2006.02756.x MYB108 acts together with MYB24 to regulate jasmonate-mediated stamen maturation in Arabidopsis.2009 · DOI: 10.1104/pp.108.132597 Gibberellin acts through jasmonate to control the expression of MYB21, MYB24, and MYB57 to promote stamen filament growth in Arabidopsis.2009 · DOI: 10.1371/journal.pgen.1000440 The Jasmonate-ZIM domain proteins interact with the R2R3-MYB transcription factors MYB21 and MYB24 to affect Jasmonate-regulated stamen development in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083089

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0315400`	Transcription factor involved in abiotic stress responses.	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.2012 · DOI: 10.1093/jxb/err431

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033334 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0035865 cellular response to potassium ion Biological Process

KEGG gene cross-reference

ath:AT3G27810

ath:AT5G59780

dosa:Os03g0315400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957

Rank 1 · LXL04_033334 · OH-1004

Cytoplasm0.129

Rank 2 · LXL04_033334 · OH-1004

Cell membrane0.017

Rank 3 · LXL04_033334 · OH-1004

Mitochondrion0.016

Rank 4 · LXL04_033334 · OH-1004

Endoplasmic reticulum0.007

Rank 5 · LXL04_033334 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding10-57 aa

PF13921.13Myb_DNA-bind_613-71 aa

PF00249.38Myb_DNA-binding63-107 aa

PF13921.13Myb_DNA-bind_667-114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033334	`PF00249.38`	Myb_DNA-binding	10	57	1.1e-35	122.2
LXL04_033334	`PF13921.13`	Myb_DNA-bind_6	13	71	1.4e-22	80.3
LXL04_033334	`PF00249.38`	Myb_DNA-binding	63	107	1.1e-35	122.2
LXL04_033334	`PF13921.13`	Myb_DNA-bind_6	67	114	1.4e-22	80.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4JL84`	Arabidopsis thaliana	Transcription factor MYB59	70.192%	Swiss-Prot	weak database homology
`Q9LK95`	Arabidopsis thaliana	Transcription factor MYB21	66.355%	Swiss-Prot	weak database homology
`Q10MB4`	Oryza sativa subsp. japonica	Transcription factor MYB2	67.593%	Swiss-Prot	weak database homology

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