LXL04_033261 | RubberDandelionOmics

Gene overview

LXL04_033261

Reference: OH-1004 Chr: Chr07 Coordinates: 39592605-39596335 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

855 bp · LXL04_033261|LXL04_033261|OH1004|cDNA

ATGCATGCATTTGCCTCAATCCTCTCATTTTTAACTTCATTTGATTCAAAAATCATCTGCCTTTTGCTCTTTTTCCCCAAAATGTACTCAGGGATTCACTCGATTCCCTTGGAAGGACCCGGTATTGACTTCCCCCGGCCGTTAACTAGTAATAACTTGGTCGGAGATCCATGTTTGGTGTTGACGACAGATCCGAAGCCGCGGCTCCGTTGGACGGCGGAGCTCCATGAGAGATTCGTCGATGCCGTTACTCAGCTCGG...

CDS

Download CDS FASTA

855 bp · LXL04_033261|LXL04_033261|OH1004|CDS

ATGCATGCATTTGCCTCAATCCTCTCATTTTTAACTTCATTTGATTCAAAAATCATCTGCCTTTTGCTCTTTTTCCCCAAAATGTACTCAGGGATTCACTCGATTCCCTTGGAAGGACCCGGTATTGACTTCCCCCGGCCGTTAACTAGTAATAACTTGGTCGGAGATCCATGTTTGGTGTTGACGACAGATCCGAAGCCGCGGCTCCGTTGGACGGCGGAGCTCCATGAGAGATTCGTCGATGCCGTTACTCAGCTCGG...

Protein

Download Protein FASTA

284 aa · LXL04_033261|LXL04_033261|OH1004|PROTEIN

MHAFASILSFLTSFDSKIICLLLFFPKMYSGIHSIPLEGPGIDFPRPLTSNNLVGDPCLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKMIMRTMGVKGLTLYHLKSHLQKYRMGKQSCKEFTENSKEASCIAESQDMGSSATSSTRMMAQDLNDGFEVTEALRAQMEVQRRLHDQLEVQHRLQLRIESQGKYLQSILEKACKAINDQAIATAGLEAAREELSELAIKVANDCPPPPGDNPNPNPVLSPMGLSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033261`
TK1151 ID	TkA08G246920
OH-1004 ID	LXL04_033261
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033261

Location Chr07:39592605-39596335 (-)

Description Similar to PHL2: Protein PHR1-LIKE 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24120`	Transcriptional activator.	Arabidopsis PHL2 and PHR1 Act Redundantly as the Key Components of the Central Regulatory System Controlling Transcriptional Responses to Phosphate Starvation.2016 · DOI: 10.1104/pp.15.01336
`At4g13640`	Transcriptional activator.	Arabidopsis PHL2 and PHR1 Act Redundantly as the Key Components of the Central Regulatory System Controlling Transcriptional Responses to Phosphate Starvation.2016 · DOI: 10.1104/pp.15.01336
`At1g79430`	Transcription factor required for phloem identity.	No verified direct reference in this release
`At5g18240`	Transcription factor that may act on the GAL1 promoter.	Cloning by pathway activation in yeast: identification of an Arabidopsis thaliana F-box protein that can turn on glucose repression.2002 · DOI: 10.1023/a:1014440531842 The Arabidopsis Myb genes MYR1 and MYR2 are redundant negative regulators of flowering time under decreased light intensity.2011 · DOI: 10.1111/j.1365-313x.2011.04508.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033261 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0009877 nodulation Biological Process

GO:0009908 flower development Biological Process

GO:0010088 phloem development Biological Process

GO:0010089 xylem development Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G79430

ath:AT3G24120

ath:AT4G13640

ath:AT5G18240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955

Rank 1 · LXL04_033261 · OH-1004

Cytoplasm0.105

Rank 2 · LXL04_033261 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_033261 · OH-1004

Plastid0.014

Rank 4 · LXL04_033261 · OH-1004

Endoplasmic reticulum0.014

Rank 5 · LXL04_033261 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding68-119 aa

PF14379.12Myb_CC_LHEQLE164-210 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033261	`PF00249.38`	Myb_DNA-binding	68	119	8.2e-08	33.0
LXL04_033261	`PF14379.12`	Myb_CC_LHEQLE	164	210	1.5e-25	89.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94A57`	Arabidopsis thaliana	Protein PHR1-LIKE 2	78.302%	Swiss-Prot	strong database homology
`Q8LAJ7`	Arabidopsis thaliana	Protein PHR1-LIKE 3	63.899%	Swiss-Prot	strong database homology
`Q9SAK5`	Arabidopsis thaliana	Myb family transcription factor APL	64.968%	Swiss-Prot	moderate database homology
`Q9FK47`	Arabidopsis thaliana	Myb-related protein 1	51.269%	Swiss-Prot	moderate database homology

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