LXL04_033247 | RubberDandelionOmics

Gene overview

LXL04_033247

Reference: OH-1004 Chr: Chr07 Coordinates: 39193080-39195585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1845 bp · LXL04_033247|LXL04_033247|OH1004|cDNA

ATGGCTCTCACCGTTGAGAAAACTTCCACCGGCCGTGAGTACAAAGTCAAGGACATGTCCTTGGCCGACTTCGGACGCCTGGAACTCGATTTAGCCGAGGTTGAAATGCCCGGTCTCATGTCCTGCAGGACGGAATTTGGTCCTTCTCAGCCTTTCAAGGGTGCGAGAATCACCGGGTCCCTCCACATGACAATCCAGACCGCTGTCCTCATTGAAACCCTCACCGCCTTGGGTGCCGAGGTTAGATGGTGCTCCTGCAA...

CDS

Download CDS FASTA

1845 bp · LXL04_033247|LXL04_033247|OH1004|CDS

ATGGCTCTCACCGTTGAGAAAACTTCCACCGGCCGTGAGTACAAAGTCAAGGACATGTCCTTGGCCGACTTCGGACGCCTGGAACTCGATTTAGCCGAGGTTGAAATGCCCGGTCTCATGTCCTGCAGGACGGAATTTGGTCCTTCTCAGCCTTTCAAGGGTGCGAGAATCACCGGGTCCCTCCACATGACAATCCAGACCGCTGTCCTCATTGAAACCCTCACCGCCTTGGGTGCCGAGGTTAGATGGTGCTCCTGCAA...

Protein

Download Protein FASTA

614 aa · LXL04_033247|LXL04_033247|OH1004|PROTEIN

MALTVEKTSTGREYKVKDMSLADFGRLELDLAEVEMPGLMSCRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLEEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFAKTGKLPDPTSTDNAEFQIVLSIIKEGLSTDPKKYHKMKDRLVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033247`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033247

Location Chr07:39193080-39195585 (-)

Description Similar to SAHH: Adenosylhomocysteinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13940`	Essential protein during embryogenesis.	The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 gene codes for an S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.2005 · DOI: 10.1105/tpc.104.028332

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_033247 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process

GO:0006730 one-carbon metabolic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016441 post-transcriptional gene silencing Biological Process

GO:0033353 S-adenosylmethionine cycle Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G13940

nsy:104246750

nta:107786358

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541

Rank 1 · LXL04_033247 · OH-1004

Nucleus0.191

Rank 2 · LXL04_033247 · OH-1004

Mitochondrion0.161

Rank 3 · LXL04_033247 · OH-1004

Peroxisome0.137

Rank 4 · LXL04_033247 · OH-1004

Cell membrane0.072

Rank 5 · LXL04_033247 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05221.24AdoHcyase13-484 aa

PF00670.28AdoHcyase_NAD240-403 aa

PF02826.262-Hacid_dh_C259-349 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033247	`PF05221.24`	AdoHcyase	13	484	1.5e-145	484.6
LXL04_033247	`PF00670.28`	AdoHcyase_NAD	240	403	1.1e-82	276.7
LXL04_033247	`PF02826.26`	2-Hacid_dh_C	259	349	2e-08	34.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23255`	Arabidopsis thaliana	Adenosylhomocysteinase 1	92.769%	Swiss-Prot	strong database homology

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