LXL04_033242 | RubberDandelionOmics

Gene overview

LXL04_033242

Reference: OH-1004 Chr: Chr07 Coordinates: 39079687-39080886 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_033242|LXL04_033242|OH1004|cDNA

ATGCAAAACAACAAATTCACCAACATGGCTCTTGTTCTCCTCTCTCTCTTCTGCTTCATTGCTTCCTCAAGGGCGGCGATATCTAATAAGATTGGTATAAATTATGGGCGGCTAGGAAACAACCTTCCATCACCATCTAAATCAATCGAACTTCTACAAAGTATGAATGCGGGTCGGGTCAAACTGTACGATGCTGACCATGAAATACTCCATCTTTTATCAGGCAAGAACATCGAAGTAGCAATCACAGTCGCAAACGA...

CDS

Download CDS FASTA

1107 bp · LXL04_033242|LXL04_033242|OH1004|CDS

ATGCAAAACAACAAATTCACCAACATGGCTCTTGTTCTCCTCTCTCTCTTCTGCTTCATTGCTTCCTCAAGGGCGGCGATATCTAATAAGATTGGTATAAATTATGGGCGGCTAGGAAACAACCTTCCATCACCATCTAAATCAATCGAACTTCTACAAAGTATGAATGCGGGTCGGGTCAAACTGTACGATGCTGACCATGAAATACTCCATCTTTTATCAGGCAAGAACATCGAAGTAGCAATCACAGTCGCAAACGA...

Protein

Download Protein FASTA

368 aa · LXL04_033242|LXL04_033242|OH1004|PROTEIN

MQNNKFTNMALVLLSLFCFIASSRAAISNKIGINYGRLGNNLPSPSKSIELLQSMNAGRVKLYDADHEILHLLSGKNIEVAITVANDEISAIASNQHLADQWVYEHVLAHYPSTKIRFVLVGNEVLSSTNTVQDMQIARDLVPAMRRIKNTIKSQGIRNIKVGTPLAMDMMETTFPPSNGSFKPAIRELMIPLLKYLNGTKSFFFVDVYPYFAWAESRANNQTGIDLGFALLRSGNMTYTDPQSGLVYTDLLDQMLDSVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033242`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033242

Location Chr07:39079687-39080886 (+)

Description Similar to A6: Probable glucan endo-1,3-beta-glucosidase A6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14080`	Probable beta-1,3-glucanase that may be involved in the degradation of callose walls around the microspore tetrad during pollen development (Probable).	No verified direct reference in this release
`At5g56590`	Glucan endo-1,3-beta-glucosidase 13.	No verified direct reference in this release
`At1g32860`	Glucan endo-1,3-beta-glucosidase 11.	No verified direct reference in this release
`At2g27500`	Glucan endo-1,3-beta-glucosidase 14.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033242 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006076 (1->3)-beta-D-glucan catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0034407 cell wall (1->3)-beta-D-glucan metabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0140547 acquisition of seed longevity Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32860

ath:AT2G27500

ath:AT4G14080

ath:AT5G56590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.444

Rank 1 · LXL04_033242 · OH-1004

Cell membrane0.251

Rank 2 · LXL04_033242 · OH-1004

Endoplasmic reticulum0.100

Rank 3 · LXL04_033242 · OH-1004

Cytoplasm0.089

Rank 4 · LXL04_033242 · OH-1004

Lysosome / Vacuole0.073

Rank 5 · LXL04_033242 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332.25Glyco_hydro_1731-359 aa

PF29664.1BtgE-BtgC_glyc-hydro47-172 aa

PF29664.1BtgE-BtgC_glyc-hydro272-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033242	`PF00332.25`	Glyco_hydro_17	31	359	3.9e-98	329.6
LXL04_033242	`PF29664.1`	BtgE-BtgC_glyc-hydro	47	172	1.6e-13	51.2
LXL04_033242	`PF29664.1`	BtgE-BtgC_glyc-hydro	272	346	1.6e-13	51.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q06915`	Arabidopsis thaliana	Probable glucan endo-1,3-beta-glucosidase A6	57.988%	Swiss-Prot	strong database homology
`Q9FJU9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 13	36.012%	Swiss-Prot	moderate database homology
`Q8L868`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 11	34.783%	Swiss-Prot	moderate database homology
`Q9ZQG9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 14	35.435%	Swiss-Prot	moderate database homology

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