Gene Card
Gene overview
cDNA / CDS / Protein Sequences
999 bp · LXL04_033136|LXL04_033136|OH1004|cDNA
ATGGACATGGTGCGATGTCTTTACAGTAGTGAAATGGCGCCGTTAGGCTGGAGGCACCACACGCTGATTCAAGCTCTGCTATCCCGTGGTCCACTCAAAGAAAAGGAGTTTCACTCCGTATTTTCCGATGTCACTGGCAAAAGCTTAGATTCTCATCAACAGCTATTCAATGAGTATCTTCGAAAGATAAACATGGAGCTATCTTATGTCCAGTTTGAGTTACGGGCATGCAGAAACCAGTATGATAGTGGTGTTTATTA...
999 bp · LXL04_033136|LXL04_033136|OH1004|CDS
ATGGACATGGTGCGATGTCTTTACAGTAGTGAAATGGCGCCGTTAGGCTGGAGGCACCACACGCTGATTCAAGCTCTGCTATCCCGTGGTCCACTCAAAGAAAAGGAGTTTCACTCCGTATTTTCCGATGTCACTGGCAAAAGCTTAGATTCTCATCAACAGCTATTCAATGAGTATCTTCGAAAGATAAACATGGAGCTATCTTATGTCCAGTTTGAGTTACGGGCATGCAGAAACCAGTATGATAGTGGTGTTTATTA...
Protein
Download Protein FASTA332 aa · LXL04_033136|LXL04_033136|OH1004|PROTEIN
MDMVRCLYSSEMAPLGWRHHTLIQALLSRGPLKEKEFHSVFSDVTGKSLDSHQQLFNEYLRKINMELSYVQFELRACRNQYDSGVYYGMINTIADEQSKLGSKYTVPQIAFYKGIIEAIVQDPTAQGTICNIDALNIRLENQATSSEVPAAFRNFSMSQKEKTIQELVIDQWLCATSDARIGLGIRSFLDLRSWFHNNEVPPCEVCNEAGIKADVCPNESCTVRMHKYCLQAKFSIQRMEKVCPKCGTQWPYVMTKSEAI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033136 |
|---|---|
| TK1151 ID | TkA08G234100 |
| OH-1004 ID | LXL04_033136 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 96.687Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033136 |
|---|---|
| Location | Chr07:36933236-36936730 (+) |
| Description | Similar to NSMCE1: Non-structural maintenance of chromosomes element 1 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006974 DNA damage response Biological Process GO:0016925 protein sumoylation Biological Process GO:0032204 regulation of telomere maintenance Biological Process GO:0140588 chromatin looping Biological Process GO:0000775 chromosome, centromeric region Cellular Component GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0030915 Smc5-Smc6 complex Cellular Component |
| KEGG gene cross-reference | bta:534249 hsa:197370 pon:100172534 rno:361645 xtr:394610 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07574.20SMC_Nse119-191 aaPF08746.18zf-RING-like203-246 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033136 | PF07574.20 | SMC_Nse1 | 19 | 191 | 1.5e-41 | 143.2 |
| LXL04_033136 | PF08746.18 | zf-RING-like | 203 | 246 | 6.5e-11 | 42.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.