LXL04_032893 | RubberDandelionOmics

Gene overview

LXL04_032893

Reference: OH-1004 Chr: Chr07 Coordinates: 31311000-31312415 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

792 bp · LXL04_032893|LXL04_032893|OH1004|cDNA

ATGGCGATCGCGAGGACCGGAGTTTTCGTTGACGACTACTTGGAGTATGCAAGCACATTGCCAGCTGAGCTGCAGAGGCTTCTCAACACCATAAGAGAGCTCGATGAACGTTCTCAATGGTGTCGTATTTGTGATATAGCCATGATCAATCAAACAAGACAACAAACAAAGAACTGCTTGGATATCGCTTCTCAAAACTCCCACAAAGGCATACACGAAGATGGCGACATGGCTTTTGATAAAATGAAGAGAGCGATTGA...

CDS

Download CDS FASTA

792 bp · LXL04_032893|LXL04_032893|OH1004|CDS

ATGGCGATCGCGAGGACCGGAGTTTTCGTTGACGACTACTTGGAGTATGCAAGCACATTGCCAGCTGAGCTGCAGAGGCTTCTCAACACCATAAGAGAGCTCGATGAACGTTCTCAATGGTGTCGTATTTGTGATATAGCCATGATCAATCAAACAAGACAACAAACAAAGAACTGCTTGGATATCGCTTCTCAAAACTCCCACAAAGGCATACACGAAGATGGCGACATGGCTTTTGATAAAATGAAGAGAGCGATTGA...

Protein

Download Protein FASTA

263 aa · LXL04_032893|LXL04_032893|OH1004|PROTEIN

MAIARTGVFVDDYLEYASTLPAELQRLLNTIRELDERSQWCRICDIAMINQTRQQTKNCLDIASQNSHKGIHEDGDMAFDKMKRAIEENQDNALNLCTEKVLLARQAYDLIDSHVKRLDEDLHNFAEDLKQEGKLPADEPAILPPLPLVPKIEKRKLPYIVPQSKKLDYREREWDHRDRDFELMPPPGGFKRDYATPLEIDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032893`
TK1151 ID	TkA08G212010
OH-1004 ID	LXL04_032893
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032893

Location Chr07:31311000-31312415 (+)

Description Similar to ING2: PHD finger protein ING2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54390`	Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032893 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001558 regulation of cell growth Biological Process

GO:0006275 regulation of DNA replication Biological Process

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006473 protein acetylation Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045926 negative regulation of growth Biological Process

GO:0050793 regulation of developmental process Biological Process

GO:0051726 regulation of cell cycle Biological Process

GO:0140889 DNA replication-dependent chromatin disassembly Biological Process

KEGG gene cross-reference

ath:AT1G54390

gga:418281

hsa:51147

mmu:28019

mmu:66262

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.729

Rank 1 · LXL04_032893 · OH-1004

Cytoplasm0.408

Rank 2 · LXL04_032893 · OH-1004

Cell membrane0.037

Rank 3 · LXL04_032893 · OH-1004

Mitochondrion0.030

Rank 4 · LXL04_032893 · OH-1004

Endoplasmic reticulum0.023

Rank 5 · LXL04_032893 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12998.13ING9-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032893	`PF12998.13`	ING	9	125	1.6e-14	55.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B3H615`	Arabidopsis thaliana	PHD finger protein ING2	73.978%	Swiss-Prot	strong database homology

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