Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1299 bp · LXL04_032752|LXL04_032752|OH1004|cDNA
ATGTCGGTAACGGCCGGTGTTAGTGATACCGTCATAGCGGTTAGGGATAAGCTTCGAGGTAAAATCGGCCAAACGAAAGTGAAGAGGTATTGGCCTGGTAAAGCTCCTGAGTGGGCCGATGATGGCGATGAAGAAGGTGATATGCGGATGGCGAGGACAGCTTCCTTGGGGAAGGCTTTCCCCAGCAGGGAAGATTCGCATATCATGAAAAGAGACGATCGTAGGCTGCGTCGTTTGGCAGAAAACAGGCTTGACAACAA...
1299 bp · LXL04_032752|LXL04_032752|OH1004|CDS
ATGTCGGTAACGGCCGGTGTTAGTGATACCGTCATAGCGGTTAGGGATAAGCTTCGAGGTAAAATCGGCCAAACGAAAGTGAAGAGGTATTGGCCTGGTAAAGCTCCTGAGTGGGCCGATGATGGCGATGAAGAAGGTGATATGCGGATGGCGAGGACAGCTTCCTTGGGGAAGGCTTTCCCCAGCAGGGAAGATTCGCATATCATGAAAAGAGACGATCGTAGGCTGCGTCGTTTGGCAGAAAACAGGCTTGACAACAA...
Protein
Download Protein FASTA432 aa · LXL04_032752|LXL04_032752|OH1004|PROTEIN
MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKAPEWADDGDEEGDMRMARTASLGKAFPSREDSHIMKRDDRRLRRLAENRLDNKEEIRADHRRIRQAEIISTEEEEQRRQERLEFEEDDEDALDERRRRIREKLLQREQEEAAMIPEVEEEDEDEEEEESSEYETDSEEEQTGMAMVKPVFVPKSERDTIAEREKIEAEELAIEELMKKRIEERKVETKQIVVEEIRKDLQIQKNLEAEANIADIETDDELNEAEEY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032752 |
|---|---|
| TK1151 ID | TkA08G203220 |
| OH-1004 ID | LXL04_032752 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032752 |
|---|---|
| Location | Chr07:28996866-28998231 (+) |
| Description | Similar to Mfap1: Microfibrillar-associated protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0010389 regulation of G2/M transition of mitotic cell cycle Biological Process GO:0001527 microfibril Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005684 U2-type spliceosomal complex Cellular Component GO:0005813 centrosome Cellular Component GO:0031012 extracellular matrix Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0071005 U2-type precatalytic spliceosome Cellular Component GO:0071011 precatalytic spliceosome Cellular Component GO:0071013 catalytic step 2 spliceosome Cellular Component |
| KEGG gene cross-reference | bta:510905 dme:Dmel_CG1017 hsa:4236 mmu:100034361 mmu:67532 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06991.17MFAP1169-390 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032752 | PF06991.17 | MFAP1 | 169 | 390 | 5.4e-75 | 252.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.