LXL04_032685 | RubberDandelionOmics

Gene overview

LXL04_032685

Reference: OH-1004 Chr: Chr07 Coordinates: 27831847-27833958 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2112 bp · LXL04_032685|LXL04_032685|OH1004|cDNA

ATGCATTCATTTATTTCCGGCAGAACCACTGGTTTTCTGCCATGGTTAGTGCTACTGTTATGCTTTTCCGGCAATGCTGTCGCCGGAACAATCTCCTTTGACTTCCAGTCCCTTTCTCTAAGCAGCTTAAAGCTCCTGGGAGACGCTCACCTAGTCAACACGAGCATCATGCTCACTCGTGAGCTCGCTGTTCCTACCTCCGGTGCCGGAGGAGTTCTATACAACAAACCTATCAGGTTCAAACGGCCGGGAAGCACGAT...

CDS

Download CDS FASTA

2112 bp · LXL04_032685|LXL04_032685|OH1004|CDS

ATGCATTCATTTATTTCCGGCAGAACCACTGGTTTTCTGCCATGGTTAGTGCTACTGTTATGCTTTTCCGGCAATGCTGTCGCCGGAACAATCTCCTTTGACTTCCAGTCCCTTTCTCTAAGCAGCTTAAAGCTCCTGGGAGACGCTCACCTAGTCAACACGAGCATCATGCTCACTCGTGAGCTCGCTGTTCCTACCTCCGGTGCCGGAGGAGTTCTATACAACAAACCTATCAGGTTCAAACGGCCGGGAAGCACGAT...

Protein

Download Protein FASTA

703 aa · LXL04_032685|LXL04_032685|OH1004|PROTEIN

MHSFISGRTTGFLPWLVLLLCFSGNAVAGTISFDFQSLSLSSLKLLGDAHLVNTSIMLTRELAVPTSGAGGVLYNKPIRFKRPGSTIPTSFTSFFSFSVTNLNSGSIGGGLAFVISPDDEDTGDAGGYLGIPTGAVAIEFDTLMDVEFKDINGNHLGVNLNSMVSTDVADLDSANIDLRSGDQINSWVEYNGSTQQLYVSISYSNIKPTSPVLSIPLDLNKYVNEFMFIGFTGSTQGSTEVHSVEWWTFNSSFDDIPQNP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032685`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032685

Location Chr07:27831847-27833958 (+)

Description Similar to LECRK81: L-type lectin-domain containing receptor kinase VIII.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53380`	L-type lectin-domain containing receptor kinase VIII.1.	No verified direct reference in this release
`At5g03140`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g55830`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g42120`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At2g37710`	L-type lectin-domain containing receptor kinase IV.1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032685 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT2G37710

ath:AT3G53380

ath:AT5G03140

ath:AT5G42120

ath:AT5G55830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.847

Rank 1 · LXL04_032685 · OH-1004

Endoplasmic reticulum0.088

Rank 2 · LXL04_032685 · OH-1004

Cytoplasm0.077

Rank 3 · LXL04_032685 · OH-1004

Nucleus0.050

Rank 4 · LXL04_032685 · OH-1004

Lysosome / Vacuole0.030

Rank 5 · LXL04_032685 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139.27Lectin_legB31-256 aa

PF18483.9Lectin_L-type_dom68-245 aa

PF00069.32Pkinase375-644 aa

PF07714.24PK_Tyr_Ser-Thr376-646 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032685	`PF00139.27`	Lectin_legB	31	256	4.4e-55	187.6
LXL04_032685	`PF18483.9`	Lectin_L-type_dom	68	245	4.4e-09	37.2
LXL04_032685	`PF00069.32`	Pkinase	375	644	6.6e-49	167.4
LXL04_032685	`PF07714.24`	PK_Tyr_Ser-Thr	376	646	1.3e-45	156.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LFH9`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VIII.1	65.255%	Swiss-Prot	strong database homology
`Q9LYX1`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VIII.2	63.650%	Swiss-Prot	strong database homology
`Q9FHG4`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase S.7	49.477%	Swiss-Prot	moderate database homology
`Q9FHX3`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase S.6	37.967%	Swiss-Prot	moderate database homology
`O80939`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase IV.1	36.656%	Swiss-Prot	moderate database homology

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