LXL04_032631 | RubberDandelionOmics

Gene overview

LXL04_032631

Reference: OH-1004 Chr: Chr07 Coordinates: 26519621-26520963 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

861 bp · LXL04_032631|LXL04_032631|OH1004|cDNA

ATGGCTTCTATGGCGGCAGCATCCTCCCTCTGTGTGTCGGAAATGCGTGGGAACCCACTCAACTTTTCCGGTAATTCCAGGACGGCTCCTTCCGCTTCCAGTCCGGCCACATTTAAGACAGTCGCCCTTTTCCAAAAGAAGAAACCAGCACCCAAAGCTAAACCCGCTCCTATCACCCCGGAATCCGACGAGCTCGCCAAGTGGTATGGTCCCGACAGAAGAATCTTCTTGCCGGAAGGTCTTCTAGACCGATCTGAGAT...

CDS

Download CDS FASTA

861 bp · LXL04_032631|LXL04_032631|OH1004|CDS

ATGGCTTCTATGGCGGCAGCATCCTCCCTCTGTGTGTCGGAAATGCGTGGGAACCCACTCAACTTTTCCGGTAATTCCAGGACGGCTCCTTCCGCTTCCAGTCCGGCCACATTTAAGACAGTCGCCCTTTTCCAAAAGAAGAAACCAGCACCCAAAGCTAAACCCGCTCCTATCACCCCGGAATCCGACGAGCTCGCCAAGTGGTATGGTCCCGACAGAAGAATCTTCTTGCCGGAAGGTCTTCTAGACCGATCTGAGAT...

Protein

Download Protein FASTA

286 aa · LXL04_032631|LXL04_032631|OH1004|PROTEIN

MASMAAASSLCVSEMRGNPLNFSGNSRTAPSASSPATFKTVALFQKKKPAPKAKPAPITPESDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGCIIPEAFNKYGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLVGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032631`
TK1151 ID	TkA08G192100
OH-1004 ID	LXL04_032631
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032631

Location Chr07:26519621-26520963 (+)

Description Similar to LHCB5: Chlorophyll a-b binding protein CP26, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10340`	The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0346500`	The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032631 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009416 response to light stimulus Biological Process

GO:0009765 photosynthesis, light harvesting Biological Process

GO:0009768 photosynthesis, light harvesting in photosystem I Biological Process

GO:0010196 nonphotochemical quenching Biological Process

GO:0010207 photosystem II assembly Biological Process

GO:0015979 photosynthesis Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009517 PSII associated light-harvesting complex II Cellular Component

GO:0009522 photosystem I Cellular Component

GO:0009523 photosystem II Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

KEGG gene cross-reference

ath:AT4G10340

dosa:Os09g0346500

sly:108491835

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.988

Rank 1 · LXL04_032631 · OH-1004

Mitochondrion0.021

Rank 2 · LXL04_032631 · OH-1004

Cytoplasm0.012

Rank 3 · LXL04_032631 · OH-1004

Nucleus0.008

Rank 4 · LXL04_032631 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_032631 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00504.29Chloroa_b-bind88-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032631	`PF00504.29`	Chloroa_b-bind	88	249	1.6e-45	156.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9XF89`	Arabidopsis thaliana	Chlorophyll a-b binding protein CP26, chloroplastic	85.000%	Swiss-Prot	strong database homology
`P12330`	Oryza sativa subsp. japonica	Chlorophyll a-b binding protein 1, chloroplastic	50.996%	Swiss-Prot	strong database homology

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