LXL04_032087 | RubberDandelionOmics

Gene overview

LXL04_032087

Reference: OH-1004 Chr: Chr07 Coordinates: 16614463-16617425 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1797 bp · LXL04_032087|LXL04_032087|OH1004|cDNA

ATGGTGAAAGAGAGAGTAGAAATTTCGATGTCCTCCTTCACCTCTAAAGGTGAAATTTTCGCTGCTGTACTCCCCGATGGACTCGTTAAAGTCTGGAACACGAGTGATGGAAGTCAGCTAGCCGAATGGAAGCACTCAGATGGAGATTCTGTTTCTCAGTTTTCTTCAATTGCTTGTAGCTTTGTGGGAAAGAAGCGCAGAAAAGAAAACAACACTTGTTTGGTGGCACTAGGAACATATAATGGTGACATCTTCACCAT...

CDS

Download CDS FASTA

1797 bp · LXL04_032087|LXL04_032087|OH1004|CDS

ATGGTGAAAGAGAGAGTAGAAATTTCGATGTCCTCCTTCACCTCTAAAGGTGAAATTTTCGCTGCTGTACTCCCCGATGGACTCGTTAAAGTCTGGAACACGAGTGATGGAAGTCAGCTAGCCGAATGGAAGCACTCAGATGGAGATTCTGTTTCTCAGTTTTCTTCAATTGCTTGTAGCTTTGTGGGAAAGAAGCGCAGAAAAGAAAACAACACTTGTTTGGTGGCACTAGGAACATATAATGGTGACATCTTCACCAT...

Protein

Download Protein FASTA

598 aa · LXL04_032087|LXL04_032087|OH1004|PROTEIN

MVKERVEISMSSFTSKGEIFAAVLPDGLVKVWNTSDGSQLAEWKHSDGDSVSQFSSIACSFVGKKRRKENNTCLVALGTYNGDIFTINATSAELKWKSSGHHHSKIAALSFSNKGRTLCAISTDGTTCELNSETGELIKEIKIPKKHISSSVFFSDDKILAASNTKIRVLTLEDGKELHKHSTDSVHHISILNDTNIIITSKLGDKNLQVWNNESSGPVLSMRHPPLSVECKNGCNEDDVIVLSVSESGIAYIWNLNISS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032087`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_032087`
Location	Chr07:16614463-16617425 (-)
Description	Similar to WDR43: WD repeat-containing protein 43
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032087` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006364 rRNA processing Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0034243 regulation of transcription elongation by RNA polymerase II Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0045943 positive regulation of transcription by RNA polymerase I Biological Process GO:2000036 regulation of stem cell population maintenance Biological Process GO:2000234 positive regulation of rRNA processing Biological Process GO:0000785 chromatin Cellular Component GO:0001650 fibrillar center Cellular Component GO:0005634 nucleus Cellular Component
KEGG gene cross-reference	dre:445394 hsa:23160 mmu:72515 spo:2543388 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.839

Rank 1 · LXL04_032087 · OH-1004

Cytoplasm0.184

Rank 2 · LXL04_032087 · OH-1004

Golgi apparatus0.035

Rank 3 · LXL04_032087 · OH-1004

Cell membrane0.034

Rank 4 · LXL04_032087 · OH-1004

Endoplasmic reticulum0.031

Rank 5 · LXL04_032087 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24817.2WD40_WDHD1_1st12-154 aa

PF23414.2Beta-prop_EML_217-125 aa

PF24805.2EIF3I22-181 aa

PF25173.2Beta-prop_WDR3_1st29-212 aa

PF13570.14Beta-prop_ACSF471-259 aa

PF25174.2Beta-prop_THOC372-185 aa

PF24796.2WDR5573-257 aa

PF23381.2Beta-prop_IFT122_1st74-212 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032087	`PF24817.2`	WD40_WDHD1_1st	12	154	2.1e-12	47.5
LXL04_032087	`PF23414.2`	Beta-prop_EML_2	17	125	2.6e-09	37.6
LXL04_032087	`PF24805.2`	EIF3I	22	181	9.3e-07	29.0
LXL04_032087	`PF25173.2`	Beta-prop_WDR3_1st	29	212	3.2e-09	37.4
LXL04_032087	`PF13570.14`	Beta-prop_ACSF4	71	259	1.8e-08	34.8
LXL04_032087	`PF25174.2`	Beta-prop_THOC3	72	185	1.2e-08	35.0
LXL04_032087	`PF24796.2`	WDR55	73	257	4.6e-12	46.3
LXL04_032087	`PF23381.2`	Beta-prop_IFT122_1st	74	212	2.6e-13	50.7
LXL04_032087	`PF12894.14`	ANAPC4_WD40	74	149	4.7e-09	37.1
LXL04_032087	`PF24814.2`	WD40_Prp19	74	201	1.5e-07	31.5
LXL04_032087	`PF23414.2`	Beta-prop_EML_2	86	215	2.6e-09	37.6
LXL04_032087	`PF25175.2`	Beta-prop_WDR5	101	258	1.7e-10	41.4
LXL04_032087	`PF04003.18`	Utp12	434	535	2.2e-16	60.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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