LXL04_032066 | RubberDandelionOmics

Gene overview

LXL04_032066

Reference: OH-1004 Chr: Chr07 Coordinates: 15876781-15878350 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

960 bp · LXL04_032066|LXL04_032066|OH1004|cDNA

ATGGCCACAACAAATGCTCCGATTTTCCAGTCATGGGCACAAATCGTATCAGCTTCTCGTGCTTCATCCAGTAGTAGCTTAACTCCTTTCGTCGCCAACACTCACGGTAGTAAAAAATTCACCGGTTATCCCTTACAAGAACATTACAGACGGAGGAATCCGTCGAAGACCAGCCGGAACATAAGAGCTGCCGCCGTCGTAGCAACGCCTCCAGCTGAGGAAGTGAAAGAAGCAGTTCTTCCCTCATGGGCGGAATTCGA...

CDS

Download CDS FASTA

960 bp · LXL04_032066|LXL04_032066|OH1004|CDS

ATGGCCACAACAAATGCTCCGATTTTCCAGTCATGGGCACAAATCGTATCAGCTTCTCGTGCTTCATCCAGTAGTAGCTTAACTCCTTTCGTCGCCAACACTCACGGTAGTAAAAAATTCACCGGTTATCCCTTACAAGAACATTACAGACGGAGGAATCCGTCGAAGACCAGCCGGAACATAAGAGCTGCCGCCGTCGTAGCAACGCCTCCAGCTGAGGAAGTGAAAGAAGCAGTTCTTCCCTCATGGGCGGAATTCGA...

Protein

Download Protein FASTA

319 aa · LXL04_032066|LXL04_032066|OH1004|PROTEIN

MATTNAPIFQSWAQIVSASRASSSSSLTPFVANTHGSKKFTGYPLQEHYRRRNPSKTSRNIRAAAVVATPPAEEVKEAVLPSWAEFDIGRSPIFWKTMNGLPPSSGERLKLFYNPAASKLAPNKEFGIAFNGMFSIFIIILPLRTLLDYNLIYRDTYVYVYFNCAGGFNQPIMCGGEPRAMLRKDRGKADPPYYTIQICVPKHAVNLIFSFTNGSEWDGPYKLQFQVPKAWRNRELDFFNQGLTEELSREGACEKAIYPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032066`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032066

Location Chr07:15876781-15878350 (-)

Description Similar to PIFI: Protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15840`	Required during nonphotochemical quenching.	A novel nucleus-encoded chloroplast protein, PIFI, is involved in NAD(P)H dehydrogenase complex-mediated chlororespiratory electron transport in Arabidopsis.2007 · DOI: 10.1104/pp.107.103218

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032066 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010196 nonphotochemical quenching Biological Process

GO:0010478 chlororespiration Biological Process

GO:0070370 cellular heat acclimation Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

KEGG gene cross-reference

ath:AT3G15840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.968

Rank 1 · LXL04_032066 · OH-1004

Nucleus0.032

Rank 2 · LXL04_032066 · OH-1004

Mitochondrion0.030

Rank 3 · LXL04_032066 · OH-1004

Cytoplasm0.027

Rank 4 · LXL04_032066 · OH-1004

Cell membrane0.020

Rank 5 · LXL04_032066 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25419.2Ig_PIFI84-137 aa

PF25419.2Ig_PIFI162-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032066	`PF25419.2`	Ig_PIFI	84	137	1e-67	227.1
LXL04_032066	`PF25419.2`	Ig_PIFI	162	247	1e-67	227.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LVZ5`	Arabidopsis thaliana	Protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic	57.836%	Swiss-Prot	strong database homology

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