LXL04_032057 | RubberDandelionOmics

Gene overview

LXL04_032057

Reference: OH-1004 Chr: Chr07 Coordinates: 15774408-15774899 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

492 bp · LXL04_032057|LXL04_032057|OH1004|cDNA

ATGGCGTCTGACCCCAATTCCATCCCCGCCACCACCTTCGTCCAAGCCGACCCTTCCAACTTCCGCGCCGTCGTCCAACGACTCACCGGCGCCACCCCACAAGAACCCTTCCTCCCACAACGGCCTGTCGGCGAAACCCCCCCTCGGAGATCCGGATTCAAGCTCCATGAACGAAGACAAAACAGTACCGGAAAACTCGAGATCACTCTCAACGACGGTGGGTTCCGACCTTTTGGTGTCATGTCTCCGTCAGCAAGACA...

CDS

Download CDS FASTA

492 bp · LXL04_032057|LXL04_032057|OH1004|CDS

ATGGCGTCTGACCCCAATTCCATCCCCGCCACCACCTTCGTCCAAGCCGACCCTTCCAACTTCCGCGCCGTCGTCCAACGACTCACCGGCGCCACCCCACAAGAACCCTTCCTCCCACAACGGCCTGTCGGCGAAACCCCCCCTCGGAGATCCGGATTCAAGCTCCATGAACGAAGACAAAACAGTACCGGAAAACTCGAGATCACTCTCAACGACGGTGGGTTCCGACCTTTTGGTGTCATGTCTCCGTCAGCAAGACA...

Protein

Download Protein FASTA

163 aa · LXL04_032057|LXL04_032057|OH1004|PROTEIN

MASDPNSIPATTFVQADPSNFRAVVQRLTGATPQEPFLPQRPVGETPPRRSGFKLHERRQNSTGKLEITLNDGGFRPFGVMSPSARQRSFVGGEIMMSSPVSTLDVYGRWSPRTPVEEEERAIAEKGFYLHPSPLSTPRGSEPELLVLFPLSSPKDNPSSSFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032057`
TK1151 ID	TkA08G146100
OH-1004 ID	LXL04_032057
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032057

Location Chr07:15774408-15774899 (+)

Description Similar to VQ11: VQ motif-containing protein 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80450`	May modulate WRKY transcription factor activities.	No verified direct reference in this release
`At3g15300`	May modulate WRKY transcription factor activities.	No verified direct reference in this release
`At5g08480`	May modulate WRKY transcription factor activities.	No verified direct reference in this release
`At5g53830`	May modulate WRKY transcription factor activities.	No verified direct reference in this release
`At1g28280`	Acts as a negative regulator of WRKY33 transcription factor activity in the promotion of defense gene expression.	The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.2014 · DOI: 10.1111/nph.12817

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032057 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0051245 negative regulation of cellular defense response Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G28280

ath:AT1G80450

ath:AT3G15300

ath:AT5G08480

ath:AT5G53830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.737

Rank 1 · LXL04_032057 · OH-1004

Cytoplasm0.415

Rank 2 · LXL04_032057 · OH-1004

Cell membrane0.068

Rank 3 · LXL04_032057 · OH-1004

Endoplasmic reticulum0.047

Rank 4 · LXL04_032057 · OH-1004

Plastid0.019

Rank 5 · LXL04_032057 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05678.20VQ8-33 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032057	`PF05678.20`	VQ	8	33	4.1e-13	49.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M8L3`	Arabidopsis thaliana	VQ motif-containing protein 11	43.023%	Swiss-Prot	moderate database homology
`Q9LDZ1`	Arabidopsis thaliana	VQ motif-containing protein 19	37.500%	Swiss-Prot	moderate database homology
`Q9FNP0`	Arabidopsis thaliana	VQ motif-containing protein 31	40.000%	Swiss-Prot	moderate database homology
`Q9FHZ3`	Arabidopsis thaliana	VQ motif-containing protein 33	36.923%	Swiss-Prot	moderate database homology
`Q5M750`	Arabidopsis thaliana	VQ motif-containing protein 4	36.957%	Swiss-Prot	moderate database homology

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