LXL04_032037 | RubberDandelionOmics

Gene overview

LXL04_032037

Reference: OH-1004 Chr: Chr07 Coordinates: 15390576-15397973 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2277 bp · LXL04_032037|LXL04_032037|OH1004|cDNA

ATGACAGGTTTGTGTGAGTTGAAGAATCTCCATGAATTGGATCTTAGTTACAACATGCTCGATGGCACTCTGCCTCAATGTTTAAACAATCTTTCATCTCTTAAGCTGTTGGATATTTCTTCAAATCGGTTCACAGGGATACTTGTGCCATCACTCATTGCTAATCTCACATCTATGGAGTACCTTGATTTCAGTCATAACAAATATAAAGGTTCATTCTTCTTCAGCTCCTTCTCCAATCATACAAATCTTGAGTTCGT...

CDS

Download CDS FASTA

2277 bp · LXL04_032037|LXL04_032037|OH1004|CDS

ATGACAGGTTTGTGTGAGTTGAAGAATCTCCATGAATTGGATCTTAGTTACAACATGCTCGATGGCACTCTGCCTCAATGTTTAAACAATCTTTCATCTCTTAAGCTGTTGGATATTTCTTCAAATCGGTTCACAGGGATACTTGTGCCATCACTCATTGCTAATCTCACATCTATGGAGTACCTTGATTTCAGTCATAACAAATATAAAGGTTCATTCTTCTTCAGCTCCTTCTCCAATCATACAAATCTTGAGTTCGT...

Protein

Download Protein FASTA

758 aa · LXL04_032037|LXL04_032037|OH1004|PROTEIN

MTGLCELKNLHELDLSYNMLDGTLPQCLNNLSSLKLLDISSNRFTGILVPSLIANLTSMEYLDFSHNKYKGSFFFSSFSNHTNLEFVRFISDNDRFEVETEEPIAWIPMFQLKFLSYLIIPKGLVIPRFLLHRHKLQQVDMSHNSMEGHFPNWLIKNNTNLERIILRNNLFSGMSLHRNTNMKWLDMSGNRIIGNIPDHIPKFFPNLHILYFSMNSLSGVIPSSVVIRSAKWIVHKHLLVICVKTIREQKHPIDSQGRSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032037`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032037

Location Chr07:15390576-15397973 (-)

Description Similar to RLP15: Receptor-like protein 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74190`	Receptor-like protein 15.	No verified direct reference in this release
`At1g07390`	Involved in plant defense.	The receptor-like protein ReMAX of Arabidopsis detects the microbe-associated molecular pattern eMax from Xanthomonas.2013 · DOI: 10.1105/tpc.113.110833 Perception of the novel MAMP eMax from different Xanthomonas species requires the Arabidopsis receptor-like protein ReMAX and the receptor kinase SOBIR.2013 · DOI: 10.4161/psb.27408
`At1g74170`	Receptor-like protein 13.	No verified direct reference in this release
`At1g58195`	Receptor-like protein 9b.	No verified direct reference in this release
`At5g49290`	Receptor-like protein 56.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032037 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G07390

ath:AT1G74170

ath:AT1G74190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.780

Rank 1 · LXL04_032037 · OH-1004

Endoplasmic reticulum0.116

Rank 2 · LXL04_032037 · OH-1004

Cytoplasm0.093

Rank 3 · LXL04_032037 · OH-1004

Nucleus0.082

Rank 4 · LXL04_032037 · OH-1004

Extracellular0.048

Rank 5 · LXL04_032037 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_145-154 aa

PF13855.13LRR_89-68 aa

PF13855.13LRR_8264-319 aa

PF23598.2LRR_14381-458 aa

PF13855.13LRR_8419-460 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032037	`PF23598.2`	LRR_14	5	154	6e-12	45.7
LXL04_032037	`PF13855.13`	LRR_8	9	68	8.6e-26	90.2
LXL04_032037	`PF13855.13`	LRR_8	264	319	8.6e-26	90.2
LXL04_032037	`PF23598.2`	LRR_14	381	458	6e-12	45.7
LXL04_032037	`PF13855.13`	LRR_8	419	460	8.6e-26	90.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6A8`	Arabidopsis thaliana	Receptor-like protein 15	29.339%	Swiss-Prot	weak database homology
`Q9LNV9`	Arabidopsis thaliana	Receptor-like protein 1	29.333%	Swiss-Prot	weak database homology
`Q9C6A6`	Arabidopsis thaliana	Receptor-like protein 13	33.333%	Swiss-Prot	moderate database homology
`A0A1P8ATR9`	Arabidopsis thaliana	Receptor-like protein 9b	32.577%	Swiss-Prot	moderate database homology
`F4K4T3`	Arabidopsis thaliana	Receptor-like protein 56	28.532%	Swiss-Prot	weak database homology

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