LXL04_031963 | RubberDandelionOmics

Gene overview

LXL04_031963

Reference: OH-1004 Chr: Chr07 Coordinates: 13932904-13934105 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

789 bp · LXL04_031963|LXL04_031963|OH1004|cDNA

ATGTCTATTGACGATAAGAAGTATGCACAAAACGCTGCTTTTGATATTAAAGAAAAGCTCAATTTTGTGAGAGATGGAGCAATCAAATTGCCACCAGGGTTTAGGTTTCAACCCACCGATCAAGAGATTGTGTTCCAATATCTGGTTCGTAAAGTCTTCTCTTGTCCCTTGCCTGCCTCTATCATCCCAGAAATTGTCAACATTTGCAACTTCAATCCTTGGGATTTGCCAGGGGAGTGGGAGCAAGAAAGATACTTCTT...

CDS

Download CDS FASTA

789 bp · LXL04_031963|LXL04_031963|OH1004|CDS

ATGTCTATTGACGATAAGAAGTATGCACAAAACGCTGCTTTTGATATTAAAGAAAAGCTCAATTTTGTGAGAGATGGAGCAATCAAATTGCCACCAGGGTTTAGGTTTCAACCCACCGATCAAGAGATTGTGTTCCAATATCTGGTTCGTAAAGTCTTCTCTTGTCCCTTGCCTGCCTCTATCATCCCAGAAATTGTCAACATTTGCAACTTCAATCCTTGGGATTTGCCAGGGGAGTGGGAGCAAGAAAGATACTTCTT...

Protein

Download Protein FASTA

262 aa · LXL04_031963|LXL04_031963|OH1004|PROTEIN

MSIDDKKYAQNAAFDIKEKLNFVRDGAIKLPPGFRFQPTDQEIVFQYLVRKVFSCPLPASIIPEIVNICNFNPWDLPGEWEQERYFFSKKEAKYGQGSRVNRKSGDGYWKATGFDKHVTRCCGNNSVLKKKETITGMKKTLVFYKSKPSTTRTHWIMHEYRLVHSPPSSTTTTTNDKKSWIQMGNWVLCHVLLNKRSRKPFEDDIGKRLGSQEQLMHPNITREDVISINCDEAASSSSSCGSSVVTQEESSSREPLDYEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031963`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031963

Location Chr07:13932904-13934105 (+)

Description Similar to NAC083: NAC domain-containing protein 83

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13180`	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation.	VND-INTERACTING2, a NAC domain transcription factor, negatively regulates xylem vessel formation in Arabidopsis.2010 · DOI: 10.1105/tpc.108.064048 The Arabidopsis NAC transcription factor VNI2 integrates abscisic acid signals into leaf senescence via the COR/RD genes.2011 · DOI: 10.1105/tpc.111.084913 Arabidopsis thaliana NAC083 protein interacts with Mungbean yellow mosaic India virus (MYMIV) Rep protein.2014 · DOI: 10.1007/s11262-013-1028-6
`At2g33480`	Transcription activator of the mannan synthase CSLA9.	No verified direct reference in this release
`At1g61110`	Transcription factor of the NAC family.	A cis regulatory element in the TAPNAC promoter directs tapetal gene expression.2011 · DOI: 10.1007/s11103-010-9713-5

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031963 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010089 xylem development Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G61110

ath:AT2G33480

ath:AT5G13180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957

Rank 1 · LXL04_031963 · OH-1004

Cytoplasm0.098

Rank 2 · LXL04_031963 · OH-1004

Cell membrane0.038

Rank 3 · LXL04_031963 · OH-1004

Endoplasmic reticulum0.025

Rank 4 · LXL04_031963 · OH-1004

Plastid0.014

Rank 5 · LXL04_031963 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM31-162 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031963	`PF02365.21`	NAM	31	162	2.1e-39	135.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FY93`	Arabidopsis thaliana	NAC domain-containing protein 83	55.801%	Swiss-Prot	moderate database homology
`O22798`	Arabidopsis thaliana	NAC domain-containing protein 41	54.913%	Swiss-Prot	moderate database homology
`Q8GY42`	Arabidopsis thaliana	NAC transcription factor 25	41.584%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card